From 76291ff1c9fde4fb82d2d3410f1553295b2ea957 Mon Sep 17 00:00:00 2001 From: quinnwai Date: Mon, 27 Jan 2025 14:53:37 -0800 Subject: [PATCH 1/4] add group member flattener --- etl-job/Dockerfile | 2 +- etl-job/fhir_import_export.py | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/etl-job/Dockerfile b/etl-job/Dockerfile index fa3c755..4cd4937 100644 --- a/etl-job/Dockerfile +++ b/etl-job/Dockerfile @@ -31,7 +31,7 @@ COPY ./requirements.txt /root RUN source venv/bin/activate && pip install -r requirements.txt # move these out of requirements.txt, so that builds are quicker when we change -RUN source venv/bin/activate && pip install "gen3_tracker==0.0.7rc6" +RUN source venv/bin/activate && pip install "gen3_tracker==0.0.7rc7" RUN source venv/bin/activate && pip install "aced-submission==0.0.10rc7" ENV PATH="/usr/local/bin:$PATH" diff --git a/etl-job/fhir_import_export.py b/etl-job/fhir_import_export.py index 6609bfb..a0a20df 100644 --- a/etl-job/fhir_import_export.py +++ b/etl-job/fhir_import_export.py @@ -207,6 +207,7 @@ def _load_all(program: str, 'specimen': db.flattened_specimens, 'file': db.flattened_document_references, "medicationadministration": db.flattened_medication_administrations, + "groupmember": db.flattened_group_members, } # To ensure differences in the dataframer versions do not conflict, clear the project, and reload the project. From e2450388e402d75428a620cd52e5c1389726a06f Mon Sep 17 00:00:00 2001 From: quinnwai Date: Thu, 30 Jan 2025 10:43:02 -0800 Subject: [PATCH 2/4] bump g3t --- etl-job/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/etl-job/Dockerfile b/etl-job/Dockerfile index 4cd4937..8fff94b 100644 --- a/etl-job/Dockerfile +++ b/etl-job/Dockerfile @@ -31,7 +31,7 @@ COPY ./requirements.txt /root RUN source venv/bin/activate && pip install -r requirements.txt # move these out of requirements.txt, so that builds are quicker when we change -RUN source venv/bin/activate && pip install "gen3_tracker==0.0.7rc7" +RUN source venv/bin/activate && pip install "gen3_tracker==0.0.7rc8" RUN source venv/bin/activate && pip install "aced-submission==0.0.10rc7" ENV PATH="/usr/local/bin:$PATH" From 78e639005a8baa61b1c28c3ef91e88ce0200a9e9 Mon Sep 17 00:00:00 2001 From: quinnwai Date: Thu, 30 Jan 2025 11:02:29 -0800 Subject: [PATCH 3/4] bump g3t --- etl-job/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/etl-job/Dockerfile b/etl-job/Dockerfile index 8fff94b..d747cf0 100644 --- a/etl-job/Dockerfile +++ b/etl-job/Dockerfile @@ -31,7 +31,7 @@ COPY ./requirements.txt /root RUN source venv/bin/activate && pip install -r requirements.txt # move these out of requirements.txt, so that builds are quicker when we change -RUN source venv/bin/activate && pip install "gen3_tracker==0.0.7rc8" +RUN source venv/bin/activate && pip install "gen3_tracker==0.0.7rc9" RUN source venv/bin/activate && pip install "aced-submission==0.0.10rc7" ENV PATH="/usr/local/bin:$PATH" From 7a2ed963f0e7866e4a2a8101bf77b94bfaa13b57 Mon Sep 17 00:00:00 2001 From: quinnwai Date: Mon, 10 Feb 2025 16:07:13 -0800 Subject: [PATCH 4/4] version bump --- etl-job/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/etl-job/Dockerfile b/etl-job/Dockerfile index d747cf0..03cc17a 100644 --- a/etl-job/Dockerfile +++ b/etl-job/Dockerfile @@ -31,7 +31,7 @@ COPY ./requirements.txt /root RUN source venv/bin/activate && pip install -r requirements.txt # move these out of requirements.txt, so that builds are quicker when we change -RUN source venv/bin/activate && pip install "gen3_tracker==0.0.7rc9" +RUN source venv/bin/activate && pip install "gen3_tracker==0.0.7rc10" RUN source venv/bin/activate && pip install "aced-submission==0.0.10rc7" ENV PATH="/usr/local/bin:$PATH"