setup.py

from setuptools import setup, find_packages
import os
folder = os.path.dirname(os.path.abspath(__file__))
setup(
    name="precisionprodb",  # Your package name
    version="2.0.2",  # Package version
    # packages=['.',],  # Automatically find sub-packages under `src`
    package_dir={'': 'src'},
    install_requires=[  # Your dependencies
        'biopython>=1.78',
        'pandas>=1.0.5',
        'numpy>=1.18.5',
    ],
    entry_points={  # Define terminal commands for each script
        'console_scripts': [
            'buildSqlite=buildSqlite:main',  # Assuming `main()` is defined in buildSqlite.py
            'downloadHuman=downloadHuman:main',
            'extractMutatedUniprot=extractMutatedUniprot:main',
            'generatePEFFoutput=generatePEFFoutput:main',
            'perChrom=perChrom:main',
            'perChromSqlite=perChromSqlite:main',
            'PrecisionProDB=PrecisionProDB:main',
            'PrecisionProDB_core=PrecisionProDB_core:main',
            'PrecisionProDB_Sqlite=PrecisionProDB_Sqlite:main',
            'PrecisionProDB_test=PrecisionProDB_test:main',
            'PrecisionProDB_vcf=PrecisionProDB_vcf:main',
            'vcf2mutation=vcf2mutation:main',
        ],
    },
    long_description=open(folder +'/README.md').read(),  # Read the README as long description
    long_description_content_type='text/markdown',
    author="Xiaolong Cao",
    author_email="ATPs@outlook.com",
    url="https://github.com/ATPs/PrecisonProDB",
    classifiers=[
        'Programming Language :: Python :: 3',
        'License :: OSI Approved :: GNU General Public License v3.0',  # Adjust to your license
        'Operating System :: OS Independent',
    ],
)