diff --git a/README.md b/README.md index 5c006ca2..5ef4642f 100644 --- a/README.md +++ b/README.md @@ -16,12 +16,12 @@ ## Installation - 💻 See the [Installation page] in the documentation for detailed instructions. + 💻 See the [Installation page](https://adaptivemotorcontrollab.github.io/CellSeg3d/welcome.html) in the documentation for detailed instructions. ## Documentation -📚 A lot of documentation is available at https://AdaptiveMotorControlLab.github.io/CellSeg3D - +📚 A lot of documentation is available at [https://AdaptiveMotorControlLab.github.io/CellSeg3D +](https://adaptivemotorcontrollab.github.io/CellSeg3d/welcome.html) You can also generate docs by running ``make html`` in the docs/ folder. ## Quick Start @@ -39,15 +39,15 @@ Then go into Plugins > napari-cellseg3d, and choose which tool to use. ## News -**New version : v0.2.0** +**New version: v0.2.0** - Changed project name to "napari_cellseg3d" to avoid setuptools deprecation - Small API changes for training/inference from a script - Some fixes to WandB integration ad csv saving after training -Previous additions : +Previous additions: -- v0.1.2 :Fixed manifest issue for PyPi +- v0.1.2: Fixed manifest issue for PyPi - Improved training interface - Unsupervised model : WNet3D - Generate labels directly from raw data! @@ -158,6 +158,21 @@ Distributed under the terms of the [MIT] license. [MONAI's optional dependencies]: https://docs.monai.io/en/stable/installation.html#installing-the-recommended-dependencies [MONAI]: https://docs.monai.io/en/stable/installation.html#installing-the-recommended-dependencies +## Citation + +``` +@article {Achard2024, + author = {Achard, Cyril and Kousi, Timokleia and Frey, Markus and Vidal, Maxime and Paychere, Yves and Hofmann, Colin and Iqbal, Asim and Hausmann, Sebastien B. and Pages, Stephane and Mathis, Mackenzie W.}, + title = {CellSeg3D: self-supervised 3D cell segmentation for microscopy}, + elocation-id = {2024.05.17.594691}, + year = {2024}, + doi = {10.1101/2024.05.17.594691}, + publisher = {Cold Spring Harbor Laboratory}, + URL = {https://www.biorxiv.org/content/early/2024/05/17/2024.05.17.594691}, + eprint = {https://www.biorxiv.org/content/early/2024/05/17/2024.05.17.594691.full.pdf}, + journal = {bioRxiv} +} +``` ## Acknowledgements This plugin was developed by originally Cyril Achard, Maxime Vidal, Mackenzie Mathis.