diff --git a/scRNA-seq-advanced/README.md b/scRNA-seq-advanced/README.md index 8b4450aa..bb8b85b4 100644 --- a/scRNA-seq-advanced/README.md +++ b/scRNA-seq-advanced/README.md @@ -7,10 +7,15 @@ It covers cell-type identification, integration of multiple single-cell RNA-seq The notebooks that comprise this module are: -* TBD -* `03-dataset_integration.Rmd` +* [Introduction and review of processing scRNA-seq data](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/01-read_filter_normalize_scRNA.nb.html) +* [Cell type annotation](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/02-celltype_assignment.nb.html) +* [Integration of multiple scRNA-seq libraries](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/03-dataset_integration.nb.html) +* [Differential expression analysis](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/04-differential_expression.nb.html) Additional exercise notebooks: -* TBD +* [Working with CITE-seq data](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_01-citeseq.Rmd) +* [Cell type annotation](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_02-celltype.Rmd) +* [Integration of multiple scRNA-seq libraries](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_03-integration.Rmd) +* [Differential expression analysis](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_04-diffexp.Rmd)