From aa91550b19db073b86265dd2d73917b149013f10 Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Wed, 25 Jan 2023 11:27:31 -0600 Subject: [PATCH 1/3] add links to readme for scadvanced --- scRNA-seq-advanced/README.md | 11 ++++++++--- 1 file changed, 8 insertions(+), 3 deletions(-) diff --git a/scRNA-seq-advanced/README.md b/scRNA-seq-advanced/README.md index 8b4450aa..37991279 100644 --- a/scRNA-seq-advanced/README.md +++ b/scRNA-seq-advanced/README.md @@ -7,10 +7,15 @@ It covers cell-type identification, integration of multiple single-cell RNA-seq The notebooks that comprise this module are: -* TBD -* `03-dataset_integration.Rmd` +* [Introduction and review of processing scRNA-seq data](./01-read_filter_normalize_scRNA.Rmd) +* [Cell type annotation](./02-celltype_assignment.Rmd) +* [Integration of multiple scRNA-seq libraries](./03-dataset_integration.Rmd) +* [Differential expression analysis](./04-differential_expression.Rmd) Additional exercise notebooks: -* TBD +* [Working with CITE-seq data](./exercise_01-citeseq.Rmd) +* [Cell type annotation](./exercise_02-celltype.Rmd) +* [Integration of multiple scRNA-seq libraries](./exercise_03-integration.Rmd) +* [Differential expression analysis](./exercise_04-diffexp.Rmd) From 82be0a91e9bf48b109dada382ac0653e3912d46e Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Wed, 25 Jan 2023 11:31:03 -0600 Subject: [PATCH 2/3] use github links --- scRNA-seq-advanced/README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/scRNA-seq-advanced/README.md b/scRNA-seq-advanced/README.md index 37991279..697eab4e 100644 --- a/scRNA-seq-advanced/README.md +++ b/scRNA-seq-advanced/README.md @@ -15,7 +15,7 @@ The notebooks that comprise this module are: Additional exercise notebooks: -* [Working with CITE-seq data](./exercise_01-citeseq.Rmd) -* [Cell type annotation](./exercise_02-celltype.Rmd) -* [Integration of multiple scRNA-seq libraries](./exercise_03-integration.Rmd) -* [Differential expression analysis](./exercise_04-diffexp.Rmd) +* [Working with CITE-seq data](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_01-citeseq.Rmd) +* [Cell type annotation](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_02-celltype.Rmd) +* [Integration of multiple scRNA-seq libraries](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_03-integration.Rmd) +* [Differential expression analysis](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_04-diffexp.Rmd) From 792870acc8c42abd096d10f31d15de128225e974 Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Wed, 25 Jan 2023 17:14:16 -0600 Subject: [PATCH 3/3] link to the notebooks --- scRNA-seq-advanced/README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/scRNA-seq-advanced/README.md b/scRNA-seq-advanced/README.md index 697eab4e..bb8b85b4 100644 --- a/scRNA-seq-advanced/README.md +++ b/scRNA-seq-advanced/README.md @@ -7,10 +7,10 @@ It covers cell-type identification, integration of multiple single-cell RNA-seq The notebooks that comprise this module are: -* [Introduction and review of processing scRNA-seq data](./01-read_filter_normalize_scRNA.Rmd) -* [Cell type annotation](./02-celltype_assignment.Rmd) -* [Integration of multiple scRNA-seq libraries](./03-dataset_integration.Rmd) -* [Differential expression analysis](./04-differential_expression.Rmd) +* [Introduction and review of processing scRNA-seq data](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/01-read_filter_normalize_scRNA.nb.html) +* [Cell type annotation](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/02-celltype_assignment.nb.html) +* [Integration of multiple scRNA-seq libraries](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/03-dataset_integration.nb.html) +* [Differential expression analysis](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/04-differential_expression.nb.html) Additional exercise notebooks: