Dev Meeting Agenda 2021/01/11

[evamaxfield]

Link to prior meeting notes

---

• Open Issues
  • AICSImageIO OmeTiffReader dask read is slow on large files TiffReader (and OmeTiffReader) slow for dask chunked reads #178
  • AICSPyLibCZI shape difference when reading mosaic from different functions Mosaic image size differs from mosaic dimentions aicspylibczi#62
  • AICSPyLibCZI no matching distribution found ERROR: no matching distribution found for aicspylibczi aicspylibczi#68
  • AICSPyLibCZI coordinates overspecified for certain mosaics Coordinates Overspecified Exception with certain Mosaic files aicspylibczi#67
  • AICSPyLibCZI naming conventions for mosaic functions Issues with understanding the naming of "scene_bounding_box" and "scene_height_by_width" functions aicspylibczi#66
  • Quick run down open issues list
• In Progress:
  • XSLT validation
    • May want to use the same validation method that the 4.0 OmeTiffReader is using.
• Open PRs
  • AICSImageIO 4.x OmeTiffReader feature/ome-tiff-reader #176
  • AICSPyLibCZI Support CZIs without Scenes CZIs without Scene  aicspylibczi#69
• Admin
  • Paper draft and next steps
  • Next up? AICSImage object -> dev release 1?

[evamaxfield]

Open Issues

@JacksonMaxfield to benchmark performace gains of making aicsimageio non-serializable / keeping a file open for dask chunk reads
@heeler to figure out the weird MacOS wheel build version differences
@heeler to respond to mosaic function naming and other issues

In Progress

@heeler to return to XSLT this week and finish it up

Open PRs

@AllenCellModeling/aicsimageio-core-devs to review #176
@AllenCellModeling/aicsimageio-core-devs to review AllenCellModeling/aicspylibczi#69

Admin

@heeler to review draft paper tomorrow and invite @JacksonMaxfield to comment session
@JacksonMaxfield to make AICSImage object and pull in existing writer work prior to dev release 1