From 127e82ce943703c4b8839fb061d3280863167d16 Mon Sep 17 00:00:00 2001 From: Yosef Bedaso Date: Tue, 23 Apr 2024 14:10:40 -0700 Subject: [PATCH 1/3] ci: adds shell script for running python scripts --- Dockerfile | 3 ++- src/aind_data_asset_indexer/run.sh | 3 +++ 2 files changed, 5 insertions(+), 1 deletion(-) create mode 100644 src/aind_data_asset_indexer/run.sh diff --git a/Dockerfile b/Dockerfile index 20548a6..02dcdf8 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,6 +3,7 @@ FROM python:3.10-slim WORKDIR /app ADD src ./src +ADD .env . ADD pyproject.toml . ADD setup.py . @@ -10,4 +11,4 @@ RUN apt-get update RUN pip install . --no-cache-dir RUN pip install awscli -CMD ["python", "src/aind_data_asset_indexer/s3_crawler.py"] +CMD ["./src/aind_data_asset_indexer/run.sh"] diff --git a/src/aind_data_asset_indexer/run.sh b/src/aind_data_asset_indexer/run.sh new file mode 100644 index 0000000..70a80d6 --- /dev/null +++ b/src/aind_data_asset_indexer/run.sh @@ -0,0 +1,3 @@ +#!/bin/bash + +python src/aind_data_asset_indexer/update_docdb.py && python src/aind_data_asset_indexer/s3_crawler.py From 2820349167478ede0349402c42db1a48c0a562cc Mon Sep 17 00:00:00 2001 From: Yosef Bedaso Date: Tue, 23 Apr 2024 15:04:36 -0700 Subject: [PATCH 2/3] ci: fixes shell script --- src/aind_data_asset_indexer/run.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/aind_data_asset_indexer/run.sh b/src/aind_data_asset_indexer/run.sh index 70a80d6..79f69cd 100644 --- a/src/aind_data_asset_indexer/run.sh +++ b/src/aind_data_asset_indexer/run.sh @@ -1,3 +1,3 @@ #!/bin/bash -python src/aind_data_asset_indexer/update_docdb.py && python src/aind_data_asset_indexer/s3_crawler.py +python src/aind_data_asset_indexer/s3_crawler.py && python src/aind_data_asset_indexer/update_docdb.py From 2fe5bcac15697245cb962a0be37185415653f00d Mon Sep 17 00:00:00 2001 From: Yosef Bedaso Date: Tue, 23 Apr 2024 15:06:43 -0700 Subject: [PATCH 3/3] ci: fixes dockerfile --- Dockerfile | 1 - 1 file changed, 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 02dcdf8..4d05492 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,7 +3,6 @@ FROM python:3.10-slim WORKDIR /app ADD src ./src -ADD .env . ADD pyproject.toml . ADD setup.py .