diff --git a/bu_isciii/__main__.py b/bu_isciii/__main__.py
index 1aebd7805..a1cf21be7 100755
--- a/bu_isciii/__main__.py
+++ b/bu_isciii/__main__.py
@@ -655,6 +655,7 @@ def autoclean_sftp(ctx, sftp_folder, days):
     "-d",
     "--input_directory",
     type=click.Path(),
+    multiple=True,
     default=None,
     required=True,
     help="Input directory to fix permissions (absolute path)",
@@ -664,15 +665,18 @@ def fix_permissions(ctx, input_directory):
     """
     Fix permissions
     """
-    if not os.path.isdir(input_directory):
-        exit("Invalid input directory")
     conf = bu_isciii.config_json.ConfigJson()
     permissions = conf.get_configuration("global").get("permissions")
-    bu_isciii.utils.remake_permissions(input_directory, permissions)
     stderr = rich.console.Console(
         stderr=True, force_terminal=bu_isciii.utils.rich_force_colors()
     )
-    stderr.print(f"[green]Correct permissions were applied to {input_directory}")
+
+    for directory in input_directory:
+        if not os.path.isdir(directory):
+            stderr.print(f"[red]Invalid input directory: {directory}")
+            continue
+        bu_isciii.utils.remake_permissions(directory, permissions)
+        stderr.print(f"[green]Correct permissions were applied to {directory}")
 
 
 if __name__ == "__main__":