PLSP_Parameters.json

{
  "setup":{
    
    "phenStartYr":2017,
    "phenEndYr":2021,
    
    "workDir":"/projectnb/planet/PLSP/",
    "logDir":"/projectnb/planet/PLSP/runLogs/",
    "geojsonDir":"/projectnb/planet/PLSP/geojson/",
    "dataDir":"/projectnb/planet/PLSP/rawImage",
    "outDir":"/projectnb/planet/PLSP/Img_cliped/",
    "rScripts":"/projectnb/planet/PLSP/GitHub/PlanetLSP/data_paper/",
    "rFunctions":"/projectnb/planet/PLSP/GitHub/PlanetLSP/data_paper/PLSP_Functions.R",
    "productTable":"/projectnb/planet/PLSP/GitHub/PlanetLSP/data_paper/PLSP_Layers.csv",
    
    "water":"/projectnb/planet/PLSP/water/",
    
    "numChunks":200,
    "numCores":28
    
  },
  
  "phenology_parameters":{
  
    "vegetation_index":"evi2",
    
    "maskNegativeValues":true,
    
    "do3dayComposites":false,
    
    "min_seg_amplitude":0.1,  
    "min_increase_length":30,   
    "max_increase_length":185,   
    "min_decrease_length":30,   
    "max_decrease_length":185,  
    "rel_amp_frac":0.35,
    
    "gup_threshes":[0.15, 0.5, 0.9],
    "gdown_threshes":[0.9, 0.5, 0.15],
    
    "dormantQuantile":0.05,  
    "dormStart":"2017-01-01",
    "dormEnd":"2021-12-31",
    
    "spikeThresh":2,            
    "minResid":0.1,              
    "maxDistance":45,            
    "maxDespikeIterations":50, 
    "MADspikeThresh":2,            
    
    "splineBuffer":185,               
    "splineSpar":0.55,   
    
    "gapLengthToFill":20,  
    "maxWeight":0.5,                 
    "minDaysForSplineComparison":90,  
    
    "sumNegVIthresh": 0.5,
    "waterOccuThreshLow": 30,
    "waterOccuThreshHigh": 80,
    "VIdormThresh": 0.05,
    "VIampThreshLow": 0.2,
    "VIampThreshHigh": 0.3
  
  },
   
  "qa_parameters":{
    "min_r2_high_quality":0.75,   
    "maxGap_high_quality":20
    
  }
  
}