diff --git a/integration-tests/generate_data_coassembly_command.py b/integration-tests/generate_data_coassembly_command.py index 7c98abb..abda9f6 100644 --- a/integration-tests/generate_data_coassembly_command.py +++ b/integration-tests/generate_data_coassembly_command.py @@ -6,7 +6,7 @@ os.makedirs('test-outputs', exist_ok=True) bam_files = glob('test/coassembly_sample_data/input.sorted*.bam') - +abun_files = glob('test/coassembly_sample_data/*.txt') for ext in ['', '.gz', '.bz2', '.xz']: odir = f"test-outputs/output_coassembly{'_'+ext.replace('.', '_') if ext else '_fa'}" @@ -37,7 +37,7 @@ '--ratio', '0.05', '--ml-threshold', '4000', '-p', '1', - '-a', 'test/coassembly_sample_data/*.txt']) + '-a'] + abun_files) data = pd.read_csv(f'{odir}/data.csv', index_col=0) data_split = pd.read_csv(f'{odir}/data_split.csv', index_col=0)