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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-parent</artifactId>
<version>2.6.6</version>
<relativePath/> <!-- lookup parent from repository -->
</parent>
<groupId>uk.ac.ed.biordm.sbol</groupId>
<artifactId>synbio2easy</artifactId>
<version>1.8.0-SNAPSHOT</version>
<name>SynBio2Easy</name>
<description>Tool for interacting with sbol2/SynBioHub in "batch" mode
using excel tables as metadata inputs.</description>
<url>https://github.com/BioRDM/synbio2easy</url>
<properties>
<java.version>11</java.version>
<maven.compiler.source>11</maven.compiler.source>
<maven.compiler.target>11</maven.compiler.target>
<maven.surefire.version>3.0.0-M5</maven.surefire.version>
</properties>
<licenses>
<license>
<name>MIT License</name>
<url>https://opensource.org/licenses/MIT</url>
</license>
</licenses>
<dependencies>
<!-- BioRDM SBOL Library -->
<dependency>
<groupId>uk.ac.ed.biordm.sbol</groupId>
<artifactId>sbol2easy</artifactId>
<version>1.7.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-web</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi</artifactId>
<version>4.1.2</version>
</dependency>
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi-ooxml</artifactId>
<version>4.1.2</version>
</dependency>
<dependency>
<!-- manually added to nexus from fat-jar -->
<groupId>org.sbolstandard</groupId>
<artifactId>libSBOLj</artifactId>
<version>2.4.0</version>
<classifier>withDependencies</classifier>
</dependency>
<!-- Mime Type Detection -->
<dependency>
<groupId>org.apache.tika</groupId>
<artifactId>tika-core</artifactId>
<version>1.18</version>
</dependency>
<dependency>
<groupId>org.apache.maven</groupId>
<artifactId>maven-artifact</artifactId>
<version>3.6.3</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
<configuration>
<executable>true</executable>
<finalName>SynBio2Easy</finalName>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>${maven.surefire.version}</version>
<configuration>
<useSystemClassLoader>false</useSystemClassLoader>
<forkCount>3</forkCount>
<reuseForks>true</reuseForks>
<argLine>-Xmx1024m</argLine>
</configuration>
</plugin>
<!-- launch4j plugin to wrap built jar in .exe for Windows -->
<!--
<plugin>
<groupId>com.akathist.maven.plugins.launch4j</groupId>
<artifactId>launch4j-maven-plugin</artifactId>
<version>2.1.1</version>
<executions>
<execution>
<id>l4j-clui</id>
<phase>package</phase>
<goals><goal>launch4j</goal></goals>
<configuration>
<dontWrapJar>false</dontWrapJar>
<headerType>console</headerType>
<outfile>target/SynBio-Toolkit.exe</outfile>
<jar>target/SynBioHub-CLI.jar</jar>
<errTitle>SynBio-Toolkit</errTitle>
<cmdLine></cmdLine>
<chdir>.</chdir>
<priority>normal</priority>
<downloadUrl>http://java.com/download</downloadUrl>
<supportUrl></supportUrl>
<stayAlive>false</stayAlive>
<restartOnCrash>false</restartOnCrash>
<manifest></manifest>
<icon></icon>
<var>CONSOLE_WIDTH=300</var>
<var>CONSOLE_HEIGHT=200</var>
<jre>
<path></path>
<bundledJre64Bit>false</bundledJre64Bit>
<bundledJreAsFallback>false</bundledJreAsFallback>
<minVersion>11</minVersion>
<maxVersion>16</maxVersion>
<jdkPreference>preferJre</jdkPreference>
<runtimeBits>64/32</runtimeBits>
</jre>
<versionInfo>
<fileVersion>1.1.0.0</fileVersion>
<txtFileVersion>1.1.0.0</txtFileVersion>
<fileDescription>SynBioHub and SBOL Toolkit</fileDescription>
<copyright>BioRDM 2021</copyright>
<productVersion>1.1.0.0</productVersion>
<txtProductVersion>1.1.0.0</txtProductVersion>
<productName>SynBio-Toolkit</productName>
<companyName></companyName>
<internalName>SynBio-Toolkit</internalName>
<originalFilename>SynBioHub-CLI.exe</originalFilename>
<trademarks></trademarks>
<language>ENGLISH_US</language>
</versionInfo>
</configuration>
</execution>
</executions>
</plugin>
-->
<!-- jSign plugin to create signed executable wrapper; 2.0 is compatible with launch4j -->
<!--
<plugin>
<groupId>net.jsign</groupId>
<artifactId>jsign-maven-plugin</artifactId>
<version>2.0</version>
<executions>
<execution>
<goals>
<goal>sign</goal>
</goals>
<configuration>
<file>target/SynBio-Toolkit.exe</file>
<name>SynBio-Toolkit</name>
<url>http://www.example.com</url>
<keystore>keystore.jks</keystore>
<alias>BioRDM</alias>
<storepass>password</storepass>
</configuration>
</execution>
</executions>
</plugin>-->
</plugins>
</build>
</project>