From bcb4caa8195d391dfb54fd9a04033614c403a929 Mon Sep 17 00:00:00 2001
From: Weina Ji <weina.ji@epfl.ch>
Date: Tue, 4 Jul 2023 15:52:51 +0200
Subject: [PATCH] Add banner

Change-Id: I572a01e0fa2117dffd0f81cfa3fcd76b04c8f28c
---
 .github/workflows/simulation_test.yml | 6 +++---
 README.rst                            | 5 +++++
 docs/overview.rst                     | 6 ++++--
 3 files changed, 12 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/simulation_test.yml b/.github/workflows/simulation_test.yml
index 0d86496b..144c3a21 100644
--- a/.github/workflows/simulation_test.yml
+++ b/.github/workflows/simulation_test.yml
@@ -59,12 +59,12 @@ jobs:
       run: |
         export SONATAREPORT_DIR=$(pwd)/libsonatareport/build/install
         export PATH=$(pwd)/nrn/build/install/bin:$PATH
-        # copy mod files from external link, to be replaced with the Zenodo link
+        # copy mod files from the Zenodo link
         wget --output-document="O1_mods.xz" --quiet "https://zenodo.org/record/8026353/files/O1_mods.xz?download=1"
         tar -xf O1_mods.xz
         cp -r mod tests/share/
-        cp core/mod/* tests/share/mod/
-        cp core/hoc/* tests/share/hoc/
+        cp core/mod/*.mod tests/share/mod/
+        cp core/hoc/*.hoc tests/share/hoc/
         nrnivmodl -coreneuron -incflags '-DENABLE_CORENEURON -I${SONATAREPORT_DIR}/include -I/usr/include/hdf5/mpich -I/usr/lib/x86_64-linux-gnu/mpich' \
           -loadflags '-L${SONATAREPORT_DIR}/lib -lsonatareport -Wl,-rpath,${SONATAREPORT_DIR}/lib -L/usr/lib/x86_64-linux-gnu/hdf5/mpich -lhdf5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/mpich/ -L/usr/lib/x86_64-linux-gnu/ -lmpich -Wl,-rpath,/usr/lib/x86_64-linux-gnu/' \
           tests/share/mod
diff --git a/README.rst b/README.rst
index 0d348494..5694a4da 100644
--- a/README.rst
+++ b/README.rst
@@ -1,3 +1,5 @@
+|banner|
+
 =============
 Neurodamus
 =============
@@ -84,3 +86,6 @@ a research center of the École polytechnique fédérale de Lausanne (EPFL),
 from the Swiss government's ETH Board of the Swiss Federal Institutes of Technology.
 
 Copyright (c) 2005-2023 Blue Brain Project/EPFL
+
+.. substitutions
+.. |banner| image:: docs/img/neurodamus_banner_230701.png
diff --git a/docs/overview.rst b/docs/overview.rst
index d221c4ce..09c2b2b2 100644
--- a/docs/overview.rst
+++ b/docs/overview.rst
@@ -1,7 +1,9 @@
 .. include:: ../README.rst
-
+    :end-before: .. substitutions
 
 License
 =======
 
-.. literalinclude:: ../LICENSE.txt
\ No newline at end of file
+.. literalinclude:: ../LICENSE.txt
+
+.. |banner| image:: ./img/neurodamus_banner_230701.png