_config.yml

title: Transformers in Single-Cell Omics
description: A curated collection of papers on transformers in single-cell analysis
baseurl: "/single-cell-transformer-papers"
url: "https://theislab.github.io"

# Build settings
markdown: kramdown
plugins:
  - jekyll-feed
  - jekyll-seo-tag

# Explicitly remove trailing slashes
permalink: /:title
trailing_slash: false

# Default layout settings
defaults:
  -
    scope:
      path: ""
    values:
      layout: "default"

# Collections
collections:
  pages:
    output: true
    permalink: /:title

# Include directories and files
include:
  - _pages
  - assets
  - assets/js/dist
  - _data

# Exclude from processing
exclude:
  - node_modules
  - webpack.config.js
  - package.json
  - package-lock.json
  - README.md
  - Gemfile
  - Gemfile.lock

# Explicitly set data directory
data_dir: _data