NAMESPACE

# Generated by roxygen2: do not edit by hand

export(annotate_methylome)
export(cmStats)
export(cmpSamples)
export(cmpSites)
export(det_dmsg)
export(det_dmt)
export(det_mrpr)
export(explore_dmsg)
export(get_genome_annotation)
export(map_methylome)
export(map_mrpr)
export(mcalls2mkobj)
export(rank_dmg)
export(rank_rbm)
export(setup_BWASPR)
export(show_dmsg)
import(GenomicRanges)
import(IRanges)
import(R.devices)
import(ggplot2)
import(grid)
import(gridExtra)
import(methylKit)
import(sqldf)
import(venneuler)
importFrom(BiocGenerics,as.data.frame)
importFrom(BiocGenerics,width)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,setdiff)
importFrom(GenomicRanges,values)
importFrom(IRanges,findOverlaps)
importFrom(IRanges,subsetByOverlaps)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_)
importFrom(dplyr,summarise)
importFrom(genomation,annotateWithFeature)
importFrom(genomation,gffToGRanges)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,ggplot)
importFrom(gplots,greenred)
importFrom(gplots,heatmap.2)
importFrom(methylKit,PCASamples)
importFrom(methylKit,getCorrelation)
importFrom(methylKit,getCoverageStats)
importFrom(methylKit,getData)
importFrom(methylKit,getMethylationStats)
importFrom(methylKit,methRead)
importFrom(methylKit,percMethylation)
importFrom(methylKit,reorganize)
importFrom(methylKit,unite)
importFrom(pastecs,stat.pen)