From 2c0a76d2ea57695878991f84db09edb672dbdb0d Mon Sep 17 00:00:00 2001 From: frapercan Date: Mon, 13 Jan 2025 04:49:28 +0100 Subject: [PATCH] stable local version --- README.md | 15 ++++++++------- pyproject.toml | 2 +- 2 files changed, 9 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 0049cda..f602fdc 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,11 @@ -# **FANTASIA Comprehensive Guide** +# **FANTASIA** +![FANTASIA Logo](docs/source/_static/FANTASIA.png) + +## **Introduction** + +FANTASIA (Functional ANnoTAtion based on embedding space SImilArity) is a pipeline for annotating Gene Ontology (GO) terms for protein sequences using advanced protein language models like **ProtT5**, **ProstT5**, and **ESM2**. This system automates complex workflows, from sequence processing to functional annotation, providing a scalable and efficient solution for protein structure and functionality analysis. + +--- ## **Table of Contents** @@ -17,12 +24,6 @@ --- -## **Introduction** - -FANTASIA (Functional ANnoTAtion based on embedding space SImilArity) is a pipeline for annotating Gene Ontology (GO) terms for protein sequences using advanced protein language models like **ProtT5**, **ProstT5**, and **ESM2**. This system automates complex workflows, from sequence processing to functional annotation, providing a scalable and efficient solution for protein structure and functionality analysis. - ---- - ## **Key Features** - **Redundancy Filtering**: Removes identical sequences with **CD-HIT** and optionally excludes sequences based on length constraints. diff --git a/pyproject.toml b/pyproject.toml index ef51902..a78342b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "FANTASIA" -version = "0.2.0" +version = "0.3.0" description = "Functional ANnoTAtion based on embedding space SImilArity" authors = ["Francisco Miguel Pérez Canales ","Gemma Martínez Redondo "] readme = "README.md"