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init should have outdir required argument #40

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kopardev opened this issue Jan 22, 2025 · 1 comment
Open

init should have outdir required argument #40

kopardev opened this issue Jan 22, 2025 · 1 comment
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enhancement New feature or request
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@kopardev
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Description of feature

init command should:

  • require outdir argument , which is path to the output directory
  • check that outdir does not exist and is writable
  • create outdir as per
@kelly-sovacool
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@kopardev what do you think about calling it something like projdir since this would be equivalent to the nextflow $projectDir variable?
outdir is already a parameter in our nextflow workflows and I'd prefer to try not to confuse the outdir projectDir and workDir

(see also CCBR/CHAMPAGNE#219)

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