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table in multiqc report showing how reads change at various steps #221

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kelly-sovacool opened this issue Jan 21, 2025 · 0 comments
Open

table in multiqc report showing how reads change at various steps #221

kelly-sovacool opened this issue Jan 21, 2025 · 0 comments
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enhancement New feature or request

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@kelly-sovacool
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Description of feature

similar to:

Image

columns:

Nreads_raw .. in raw fastqs
Nreads_trimmed ... after trimming
Percentage after trimming w.r.t Nreads_raw
Nreads_mapped ... after mapping
Percentage mapped out of Nreads_trimmed and NOT Nreads_raw
Nreads_Q5DD ... after Q5DD filtering
Percentage Q5DD again w.r.t Nreads_trimmed
Nreads_peaks ... number of reads in peaks  
Percentage in peaks ... w.r.t Nreads_Q5DD ... NOT Nreads_trimmed or Nreads_mapped or Nreads_raw ..  This is the same as "FRiP"
@kelly-sovacool kelly-sovacool added the enhancement New feature or request label Jan 21, 2025
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@kelly-sovacool