From ac602af6e4db8947a0905ecd727553c9bd457117 Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Fri, 27 Dec 2024 10:38:14 -0500
Subject: [PATCH] chore: snakemake must already be in user path for eddie

---
 charlie | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/charlie b/charlie
index 3a860e3..bf419ae 100755
--- a/charlie
+++ b/charlie
@@ -626,7 +626,8 @@ function main(){
   elif [ "$PLATFORM" == "eddie" ]; then
     # TODO fill in other variables for eddie
     CLUSTER_PROFILE="config/eddie"
-    MODULE_LOAD="module load python/$PYTHONVERSION snakemake/$SNAKEMAKEVERSION singularity"
+    MODULE_LOAD="module load python/3.8 singularity"
+    # snakemake is already in Taka's path in his bashrc
     TEMP_DIR="/exports/eddie/scratch/$USER"
   else
     CLUSTER_PROFILE="config/unknown"