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module use /data/CCBR_Pipeliner/ccbrpipeliner_dev/modules
module load ccbrpipeliner/7
charlie -w=/data/$USER/charlie_test_rel-7 -m=init
charlie -w=/data/$USER/charlie_test_rel-7 -m=dryrun
[+] Loading singularity 4.0.3 on cn1951
[+] Loading snakemake 7.32.4
Working Dir: /gpfs/gsfs12/users/sovacoolkl/charlie_test_rel-7
singularity cache dir (--singcache) is not set, using /data/sovacoolkl/.singularity
[+] Loading python 3.10 ...
[-] Unloading snakemake 7.32.4
[+] Loading snakemake 7.32.4
[-] Unloading singularity 4.0.3 on cn1951
[+] Loading singularity 4.0.3 on cn1951
sbatch --parsable --cpus-per-task {cluster.threads} -p {cluster.partition} -t {cluster.time} --mem {cluster.mem} --job-name {cluster.name} --output {cluster.output} --error {cluster.error} --gres {cluster.gres}
PermissionError in file /gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/CHARLIE/.v0.11.0/workflow/rules/init.smk, line 91:
TEMPDIR /lscratch/$SLURM_JOB_ID cannot be written to.
Hint: does the path exist and do you have write permissions?
File "/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/CHARLIE/.v0.11.0/workflow/Snakefile", line 19, in <module>
File "/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/CHARLIE/.v0.11.0/workflow/rules/init.smk", line 91, in <module>
also occurs with -m=run
The text was updated successfully, but these errors were encountered:
error reported by @wilfriedguiblet
also occurs with
-m=run
The text was updated successfully, but these errors were encountered: