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drugz half_window_size default should be 500 #52

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kelly-sovacool opened this issue Nov 14, 2024 · 1 comment
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drugz half_window_size default should be 500 #52

kelly-sovacool opened this issue Nov 14, 2024 · 1 comment
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@kelly-sovacool
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kelly-sovacool commented Nov 14, 2024 •
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otherwise there can be errors if it's too small
@kelly-sovacool kelly-sovacool added the bug Something isn't working label Nov 14, 2024
@kelly-sovacool kelly-sovacool changed the title drugz half_window_size needs to be a user-defined param drugz half_window_size default should be 500 Nov 14, 2024
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it already is! 🤦🏻‍♀️

CRISPIN/nextflow.config

Line 28 in 049401d

half_window_size = 500 // same as default in drugZ https://github.com/hart-lab/drugz/blob/eb15d34e4dd172965e618d5bb662c053066da799/drugz.py#L305-L306

it's just the test profile that uses 5

CRISPIN/conf/test.config

Line 17 in 049401d

half_window_size = 5

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