diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 11ed0a7..12dc373 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -3,7 +3,8 @@ default_stages: [pre-commit] exclude: | (?x)( ^assets/| - ^docs/.*.html + ^docs/.*.html| + ^_extensions/ ) repos: - repo: https://github.com/pre-commit/pre-commit-hooks @@ -12,6 +13,7 @@ repos: - id: check-added-large-files - id: end-of-file-fixer - id: trailing-whitespace + - id: check-json # spell check - repo: https://github.com/codespell-project/codespell rev: v2.2.4 diff --git a/.prettierrc b/.prettierrc index df71f4f..81ee40a 100644 --- a/.prettierrc +++ b/.prettierrc @@ -1,4 +1,7 @@ overrides: - - files: "*.md" + - files: + - "*.md" + - "*.cff" + - ".prettierrc" options: tabWidth: 2 diff --git a/CITATION.cff b/CITATION.cff index 6ded8ed..6d81de7 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -3,12 +3,16 @@ message: "Please cite LOGAN as below." # TODO set up Zenodo to archive your tool authors: - family-names: Nousome given-names: Darryl + orcid: https://orcid.org/0000-0002-5259-8599 + affiliation: Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA - family-names: Sovacool given-names: Kelly orcid: https://orcid.org/0000-0003-3283-829X + affiliation: Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA - family-names: Koparde given-names: Vishal orcid: https://orcid.org/0000-0001-8978-8495 + affiliation: Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA title: "LOGAN: whoLe genOme-sequencinG Analysis pipeliNe" url: https://ccbr.github.io/LOGAN/ repository-code: https://github.com/CCBR/LOGAN