diff --git a/docker/hmftools/Dockerfile b/docker/hmftools/Dockerfile
deleted file mode 100644
index eabaac6..0000000
--- a/docker/hmftools/Dockerfile
+++ /dev/null
@@ -1,37 +0,0 @@
-FROM --platform=linux/amd64 nciccbr/ccbr_ubuntu_base_20.04:v5
-
-# build time variables
-ARG BUILD_DATE="000000"
-ENV BUILD_DATE=${BUILD_DATE}
-ARG BUILD_TAG="000000"
-ENV BUILD_TAG=${BUILD_TAG}
-ARG REPONAME="000000"
-ENV REPONAME=${REPONAME}
-
-LABEL maintainer <nousomedr@nih.gov>
-
-# Create Container filesystem specific 
-# working directory and opt directories 
-WORKDIR /opt2 
-
-# This section installs system packages required for your project
-# If you need extra system packages add them here.
-# python/3.8.0 and python/2.7.16 (strelka and manta)
-RUN apt-get update \
- && apt-get -y upgrade \
- && DEBIAN_FRONTEND=noninteractive apt-get install -y \
-      bc    
-
-    
-# HMFtools for PURPLE/COBALT/AMBER
-RUN wget https://github.com/hartwigmedical/hmftools/releases/download/amber-v4.0/amber-4.0.jar \
-    && wget https://github.com/hartwigmedical/hmftools/releases/download/cobalt-v1.16/cobalt_v1.16.jar \
-    && wget https://github.com/hartwigmedical/hmftools/releases/download/purple-v4.0/purple_v4.0.jar \
-    && wget https://github.com/hartwigmedical/hmftools/releases/download/sage-v3.4/sage_v3.4.jar \ 
-    && mkdir hmftools \
-    && mv amber-4.0.jar hmftools/amber.jar \
-    && mv cobalt_v1.16.jar hmftools/cobalt.jar \
-    && mv purple_v4.0.jar hmftools/purple.jar \
-    && mv sage.v3.4.jar hmftools/sage.jar \
-    && chmod a+x hmftools/amber.jar
-ENV PATH="/opt2/hmftools:$PATH"
\ No newline at end of file
diff --git a/docker/hmftools/build.sh b/docker/hmftools/build.sh
deleted file mode 100644
index 7a3c599..0000000
--- a/docker/hmftools/build.sh
+++ /dev/null
@@ -1,11 +0,0 @@
-# Build image
-
-docker build --platform linux/amd64 --tag ccbr_logan_hmftools:v0.0.1 -f Dockerfile . 
-
-docker tag ccbr_logan_hmftools:v0.0.1 dnousome/ccbr_logan_hmftools:v0.0.1
-docker push dnousome/ccbr_logan_hmftools:v0.0.1
-
-docker push dnousome/ccbr_logan_hmftools:latest
-
-
-
diff --git a/docker/hmftools/meta.yml b/docker/hmftools/meta.yml
deleted file mode 100644
index 6424d42..0000000
--- a/docker/hmftools/meta.yml
+++ /dev/null
@@ -1,4 +0,0 @@
-dockerhub_namespace: dnousome
-image_name: ccbr_logan_hmftools
-version: v0.0.1
-container: "$(dockerhub_namespace)/$(image_name):$(version)"
diff --git a/docker/logan_base/Dockerfile b/docker/logan_base/Dockerfile
index 07ff7dc..b60fadc 100644
--- a/docker/logan_base/Dockerfile
+++ b/docker/logan_base/Dockerfile
@@ -213,6 +213,18 @@ RUN wget -O muse_2.0.4.tar.gz https://github.com/wwylab/MuSE/archive/refs/tags/v
 
 ENV PATH="/opt2/MuSE:$PATH"
 
+# HMFtools for PURPLE/COBALT/AMBER
+RUN wget https://github.com/hartwigmedical/hmftools/releases/download/amber-v4.0/amber-4.0.jar \
+    && wget https://github.com/hartwigmedical/hmftools/releases/download/cobalt-v1.16/cobalt_v1.16.jar \
+    && wget https://github.com/hartwigmedical/hmftools/releases/download/purple-v4.0/purple_v4.0.jar \
+    && wget https://github.com/hartwigmedical/hmftools/releases/download/sage-v3.4/sage_v3.4.jar \ 
+    && mkdir hmftools \
+    && mv amber-4.0.jar hmftools/amber.jar \
+    && mv cobalt_v1.16.jar hmftools/cobalt.jar \
+    && mv purple_v4.0.jar hmftools/purple.jar \
+    && mv sage.v3.4.jar hmftools/sage.jar \
+    && chmod a+x hmftools/amber.jar
+ENV PATH="/opt2/hmftools:$PATH"
 
 # Add Dockerfile and argparse.bash script
 # and export environment variables