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batch effect correction #19

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kelly-sovacool opened this issue Dec 29, 2023 · 1 comment · Fixed by #87

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kelly-sovacool commented Dec 29, 2023 •

edited by sync-by-unito bot

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for deseq2, use design = ~ batch + condition
for limma-voom, may need to do batch correction on the count matrix before running limma

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kelly-sovacool commented Jan 8, 2025

see #83

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Add batch_correct_counts() #87

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kelly-sovacool closed this as completed in #87

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