diff --git a/dockerhub_repos/sc-smk-wl/vr1.0.0/Dockerfile b/dockerhub_repos/sc-smk-wl/vr1.0.0/Dockerfile index 23d03cf..bea3e43 100644 --- a/dockerhub_repos/sc-smk-wl/vr1.0.0/Dockerfile +++ b/dockerhub_repos/sc-smk-wl/vr1.0.0/Dockerfile @@ -12,7 +12,6 @@ RUN R -e 'install.packages("pkgbuild")' RUN R -e 'devtools::install_version("dplyr", version = "1.1.4", repos = "https://cran.rstudio.com/",upgrade = "never", force = TRUE)' RUN R -e 'devtools::install_version("Seurat", version = "5.0.1", repos = "https://cran.rstudio.com/",upgrade = "never", force = TRUE)' RUN R -e 'devtools::install_version("clusterProfiler", version="4.10.1", repos=c("https://bioconductor.org/packages/3.18/bioc","http://cran.us.r-project.org"),upgrade = "never", force = TRUE)' -RUN R -e 'devtools::install_version("SingleR", version="2.4.1", repos=c("https://bioconductor.org/packages/3.18/bioc","http://cran.us.r-project.org"),upgrade = "never", force = TRUE)' RUN R -e 'devtools::install_version("celda", version="1.18.2", repos=c("https://bioconductor.org/packages/3.18/bioc", "https://bioconductor.org/packages/devel/bioc","http://cran.us.r-project.org"),upgrade = "never", force = TRUE)' RUN R -e 'devtools::install_version("GSVA", version="1.50.2", repos=c("https://bioconductor.org/packages/3.18/bioc","http://cran.us.r-project.org"),upgrade = "never", force = TRUE)' RUN R -e 'devtools::install_version("org.Hs.eg.db", version="3.18.0", repos="https://bioconductor.org/packages/3.18/data/annotation", upgrade = "never", force = TRUE)'