Specimen terms request to be added into CIDO

[linikujp]

Below is a list of verbatims copied from the EUA documents with limited redundant check. Those terms include synonyms, alternative terms and acronyms. Please sort it out with correct hierarchies before adding into CIDO. Some specimen terms can be imported from OBI.

anterior nasal swab
BAL fluid
BAL specimen
BALs
bronchial aspirates
bronchial washings
bronchial washings (BW)
bronchoalveolar lavage
bronchoalveolar lavages (BAL)/bronchial washings (BW)
lower respiratory specimens
lower respiratory tract aspirates
mid turbinate nasal swabs
midturbinate
mid-turbinate
mid-turbinate nasal swab
nasal
nasal aspirates
nasal swab
nasal wash
nasopharyngeal
nasopharyngeal (NP)
nasopharyngeal and oropharyngeal specimens
nasopharyngeal and oropharyngeal swab and bronchoalveolar lavage (BAL) specimen
nasopharyngeal aspirates
nasopharyngeal aspirates (NA)/nasal washings (NW)
nasopharyngeal awash/aspirate or nasal aspirates as well as sputum specimens
nasopharyngeal swab
nasopharyngeal swabs/wash
nasopharyngeal wash
nasopharyngeal wash/aspirates
NP/OP
oropharyngeal (OP)
oropharyngeal (throat) swab
oropharyngeal swabs/throat swabs
saliva specimens
sputum
throat (oropharyngeal) swab
tracheal aspirates
tracheal secretions
upper respiratory specimens
stool specimen
human serum or plasma (EDTA) specimen

[linikujp]

Please pay attention to swab and specimen took using a swab.
Swab is a device/tool, you may need to add a specimen for terms ending with swab.

[bpeters42]

Specimens are a key class in OBI scope, and there seems to be nothing 'covid' specific about these terms. If there are things not in OBI that you need, can you please request them? And note that the LOINC terms you linked to are all going to be in OBI as well.

[linikujp]

Just requested these terms to OBI: obi-ontology/obi#1176 per @bpeters42's request. When OBI add those terms, this issue will be closed.

[bpeters42]

All the ones I checked are in OBI already? Did you take a look, and if so, what could you not find?

…

On Wed, Jun 10, 2020 at 8:57 AM Asiyah Yu Lin ***@***.***> wrote: Just requested these terms to OBI: obi-ontology/obi#1176 <obi-ontology/obi#1176> per @bpeters42 <https://github.com/bpeters42>'s request. When OBI add those terms, this issue will be closed. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#7 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADJX2IWSTGCGG2XH6BYBOC3RV6UP3ANCNFSM4NR5NHMQ> .

-- Bjoern Peters Professor La Jolla Institute for Allergy and Immunology 9420 Athena Circle La Jolla, CA 92037, USA Tel: 858/752-6914 Fax: 858/752-6987 http://www.liai.org/pages/faculty-peters

[linikujp]

anterior nasal swab
BAL fluid
BAL specimen
BALs
bronchial aspirates
bronchial washings
bronchial washings (BW)
bronchoalveolar lavage OBI
bronchoalveolar lavages (BAL)/bronchial washings (BW)
lower respiratory specimens
lower respiratory tract aspirates
mid turbinate nasal swabs
midturbinate
mid-turbinate
mid-turbinate nasal swab
nasal
nasal aspirates
nasal swab OBI
nasal wash
nasopharyngeal
nasopharyngeal (NP)
nasopharyngeal and oropharyngeal specimens
nasopharyngeal and oropharyngeal swab and bronchoalveolar lavage (BAL) specimen
nasopharyngeal aspirates
nasopharyngeal aspirates (NA)/nasal washings (NW)
nasopharyngeal awash/aspirate or nasal aspirates as well as sputum specimens
nasopharyngeal swab OBI
nasopharyngeal swabs/wash
nasopharyngeal wash
nasopharyngeal wash/aspirates OBI
NP/OP
oropharyngeal (OP)
oropharyngeal (throat) swab OBI
oropharyngeal swabs/throat swabs
saliva specimens OBI
sputum OBI
throat (oropharyngeal) swab
tracheal aspirates
tracheal secretions
upper respiratory specimens
stool specimen OBI
human serum or plasma (EDTA) specimen OBI

More reference see CIDO-ontology/CIDO-Diagnosis#1