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Singularity issue on University of Arizona HPC #33

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benlee0423 opened this issue Jan 7, 2025 · 2 comments
Open

Singularity issue on University of Arizona HPC #33

benlee0423 opened this issue Jan 7, 2025 · 2 comments
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@benlee0423
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This issue reported by Shahab.

Last used data directory path: /xdisk/niug/farmani/NextGen/ngen-data/AWI_16_2863657_007
Do you want to use the same path? (Y/n): y
The Directory you've given is:
/xdisk/niug/farmani/NextGen/ngen-data/AWI_16_2863657_007
forcings exists. 1 forcings found.
config exists. 4 config found.
outputs exists. 2 outputs found.
Files found: 0
Outputs is ready for run. No matching files found.
Files found: 0
ngen/data is ready for run. No matching files found.
Looking in the provided directory gives us:
Found these datastream files:
Found these datastream files:
Found these realization files:
/xdisk/niug/farmani/NextGen/ngen-data/AWI_16_2863657_007/config/realization.json
Detected ISA = Linux cpu22.elgato.hpc.arizona.edu 3.10.0-1160.119.1.el7.x86_64 #1 SMP Tue Jun 4 14:43:51 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
apptainer version 1.3.2-1.el7
Singularity found
Select an option (type a number):

  1. Run NextGen Model using local singularity image 3) Exit
  2. Run Nextgen using remote singularity image
    #? 2
    pulling container and running the model
    FATAL: Unable to get library client configuration: unable to get library service URI: error making request to server: Get "https://library.apptainer.org/assets/config/config.prod.json": dial tcp: lookup library.apptainer.org on 128.196.11.233:53: no such host
@benlee0423
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The image have to downloaded from sylabs.io, not from library.apptainer.org. That's the root cause of it. If you install correct version of singularity, it should work.

@TrupeshKumarPatel TrupeshKumarPatel self-assigned this Jan 21, 2025
@TrupeshKumarPatel TrupeshKumarPatel added the bug Something isn't working label Jan 21, 2025
@TrupeshKumarPatel
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The potential solution (Note : These commands must be run at the user side):

apptainer remote add --insecure SylabsCloud cloud.sycloud.io
 
apptainer remote use SylabsCloud

OR

singularity remote add --insecure SylabsCloud cloud.sycloud.io
 
singularity remote use SylabsCloud

@TrupeshKumarPatel TrupeshKumarPatel removed the bug Something isn't working label Jan 21, 2025
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3 participants