From c283653c8645071ab706bd4762e7316c12690802 Mon Sep 17 00:00:00 2001 From: Harry Keightley Date: Mon, 16 Oct 2023 10:16:14 +1000 Subject: [PATCH 1/8] Remove unused imports from example script --- example.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/example.py b/example.py index 458b397..c5fa795 100644 --- a/example.py +++ b/example.py @@ -1,11 +1,9 @@ import shutil -from itertools import groupby, takewhile from pathlib import Path -from pprint import pprint from loguru import logger from tqdm import tqdm -from transformers import TrainingArguments, training_args +from transformers import TrainingArguments from elpis.datasets import Dataset from elpis.datasets.dataset import CleaningOptions From 97c00462e3e524c1fd5f0b7869b719f84070f416 Mon Sep 17 00:00:00 2001 From: Harry Keightley Date: Mon, 16 Oct 2023 10:16:50 +1000 Subject: [PATCH 2/8] Downgrade torch version to fix missing cuda dependencies --- poetry.lock | 1641 ++++++++++++++++++++++++++++++------------------ pyproject.toml | 2 +- 2 files changed, 1018 insertions(+), 625 deletions(-) diff --git a/poetry.lock b/poetry.lock index d960003..a8191fb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -25,7 +25,7 @@ testing = ["bitsandbytes", "datasets", "deepspeed", "evaluate", "parameterized", [[package]] name = "aiohttp" -version = "3.8.5" +version = "3.8.6" description = "Async http client/server framework (asyncio)" category = "main" optional = false @@ -79,12 +79,15 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte [[package]] name = "audioread" -version = "3.0.0" -description = "multi-library, cross-platform audio decoding" +version = "3.0.1" +description = "Multi-library, cross-platform audio decoding." category = "main" optional = false python-versions = ">=3.6" +[package.extras] +test = ["tox"] + [[package]] name = "black" version = "22.12.0" @@ -116,18 +119,18 @@ python-versions = ">=3.6" [[package]] name = "cffi" -version = "1.15.1" +version = "1.16.0" description = "Foreign Function Interface for Python calling C code." category = "main" optional = false -python-versions = "*" +python-versions = ">=3.8" [package.dependencies] pycparser = "*" [[package]] name = "charset-normalizer" -version = "3.2.0" +version = "3.3.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "main" optional = false @@ -144,6 +147,17 @@ python-versions = ">=3.7" [package.dependencies] colorama = {version = "*", markers = "platform_system == \"Windows\""} +[[package]] +name = "cmake" +version = "3.27.7" +description = "CMake is an open-source, cross-platform family of tools designed to build, test and package software" +category = "main" +optional = false +python-versions = "*" + +[package.extras] +test = ["coverage (>=4.2)", "flake8 (>=3.0.4)", "path.py (>=11.5.0)", "pytest (>=3.0.3)", "pytest-cov (>=2.4.0)", "pytest-runner (>=2.9)", "pytest-virtualenv (>=1.7.0)", "scikit-build (>=0.10.0)", "setuptools (>=28.0.0)", "virtualenv (>=15.0.3)", "wheel"] + [[package]] name = "colorama" version = "0.4.6" @@ -165,7 +179,7 @@ toml = ["tomli"] [[package]] name = "datasets" -version = "2.14.4" +version = "2.14.5" description = "HuggingFace community-driven open-source library of datasets" category = "main" optional = false @@ -174,7 +188,7 @@ python-versions = ">=3.8.0" [package.dependencies] aiohttp = "*" dill = ">=0.3.0,<0.3.8" -fsspec = {version = ">=2021.11.1", extras = ["http"]} +fsspec = {version = ">=2023.1.0,<2023.9.0", extras = ["http"]} huggingface-hub = ">=0.14.0,<1.0.0" multiprocess = "*" numpy = ">=1.17" @@ -223,7 +237,7 @@ graph = ["objgraph (>=1.7.2)"] [[package]] name = "evaluate" -version = "0.4.0" +version = "0.4.1" description = "HuggingFace community-driven open-source library of evaluation" category = "main" optional = false @@ -244,14 +258,14 @@ tqdm = ">=4.62.1" xxhash = "*" [package.extras] -dev = ["Werkzeug (>=1.0.1)", "absl-py", "bert-score (>=0.3.6)", "black (>=22.0,<23.0)", "cer (>=1.2.0)", "charcut (>=1.1.1)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "jiwer", "mauve-text", "nltk", "pytest", "pytest-datadir", "pytest-xdist", "pyyaml (>=5.3.1)", "requests-file (>=1.5.1)", "rouge-score (>=0.1.2)", "sacrebleu", "sacremoses", "scikit-learn", "scipy", "sentencepiece", "seqeval", "six (>=1.15.0,<1.16.0)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1,<=2.10)", "texttable (>=1.6.3)", "tldextract (>=3.1.0)", "toml (>=0.10.1)", "torch", "transformers", "trectools", "unidecode (>=1.3.4)"] +dev = ["Werkzeug (>=1.0.1)", "absl-py", "accelerate", "bert-score (>=0.3.6)", "black (>=22.0,<23.0)", "cer (>=1.2.0)", "charcut (>=1.1.1)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "jiwer", "mauve-text", "nltk", "pytest", "pytest-datadir", "pytest-xdist", "pyyaml (>=5.3.1)", "requests-file (>=1.5.1)", "rouge-score (>=0.1.2)", "sacrebleu", "sacremoses", "scikit-learn", "scipy", "sentencepiece", "seqeval", "six (>=1.15.0,<1.16.0)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1,<=2.10)", "texttable (>=1.6.3)", "tldextract (>=3.1.0)", "toml (>=0.10.1)", "torch", "transformers", "trectools", "unidecode (>=1.3.4)"] docs = ["s3fs"] evaluator = ["scipy (>=1.7.1)", "transformers"] quality = ["black (>=22.0,<23.0)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)"] template = ["cookiecutter", "gradio (>=3.0.0)"] tensorflow = ["tensorflow (>=2.2.0,!=2.6.0,!=2.6.1)"] tensorflow-gpu = ["tensorflow-gpu (>=2.2.0,!=2.6.0,!=2.6.1)"] -tests = ["Werkzeug (>=1.0.1)", "absl-py", "bert-score (>=0.3.6)", "cer (>=1.2.0)", "charcut (>=1.1.1)", "jiwer", "mauve-text", "nltk", "pytest", "pytest-datadir", "pytest-xdist", "requests-file (>=1.5.1)", "rouge-score (>=0.1.2)", "sacrebleu", "sacremoses", "scikit-learn", "scipy", "sentencepiece", "seqeval", "six (>=1.15.0,<1.16.0)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1,<=2.10)", "texttable (>=1.6.3)", "tldextract (>=3.1.0)", "toml (>=0.10.1)", "torch", "transformers", "trectools", "unidecode (>=1.3.4)"] +tests = ["Werkzeug (>=1.0.1)", "absl-py", "accelerate", "bert-score (>=0.3.6)", "cer (>=1.2.0)", "charcut (>=1.1.1)", "jiwer", "mauve-text", "nltk", "pytest", "pytest-datadir", "pytest-xdist", "requests-file (>=1.5.1)", "rouge-score (>=0.1.2)", "sacrebleu", "sacremoses", "scikit-learn", "scipy", "sentencepiece", "seqeval", "six (>=1.15.0,<1.16.0)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1,<=2.10)", "texttable (>=1.6.3)", "tldextract (>=3.1.0)", "toml (>=0.10.1)", "torch", "transformers", "trectools", "unidecode (>=1.3.4)"] torch = ["torch"] [[package]] @@ -267,18 +281,16 @@ test = ["pytest (>=6)"] [[package]] name = "filelock" -version = "3.12.3" +version = "3.12.4" description = "A platform independent file lock." category = "main" optional = false python-versions = ">=3.8" -[package.dependencies] -typing-extensions = {version = ">=4.7.1", markers = "python_version < \"3.11\""} - [package.extras] docs = ["furo (>=2023.7.26)", "sphinx (>=7.1.2)", "sphinx-autodoc-typehints (>=1.24)"] testing = ["covdefaults (>=2.3)", "coverage (>=7.3)", "diff-cover (>=7.7)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "pytest-timeout (>=2.1)"] +typing = ["typing-extensions (>=4.7.1)"] [[package]] name = "frozenlist" @@ -290,7 +302,7 @@ python-versions = ">=3.8" [[package]] name = "fsspec" -version = "2023.9.0" +version = "2023.6.0" description = "File-system specification" category = "main" optional = false @@ -326,11 +338,11 @@ tqdm = ["tqdm"] [[package]] name = "huggingface-hub" -version = "0.16.4" +version = "0.17.3" description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub" category = "main" optional = false -python-versions = ">=3.7.0" +python-versions = ">=3.8.0" [package.dependencies] filelock = "*" @@ -342,16 +354,17 @@ tqdm = ">=4.42.1" typing-extensions = ">=3.7.4.3" [package.extras] -all = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "black (>=23.1,<24.0)", "gradio", "jedi", "mypy (==0.982)", "numpy", "pydantic", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "ruff (>=0.0.241)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "urllib3 (<2.0)"] +all = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "black (==23.7)", "gradio", "jedi", "mypy (==1.5.1)", "numpy", "pydantic (<2.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "ruff (>=0.0.241)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "urllib3 (<2.0)"] cli = ["InquirerPy (==0.3.4)"] -dev = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "black (>=23.1,<24.0)", "gradio", "jedi", "mypy (==0.982)", "numpy", "pydantic", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "ruff (>=0.0.241)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "urllib3 (<2.0)"] +dev = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "black (==23.7)", "gradio", "jedi", "mypy (==1.5.1)", "numpy", "pydantic (<2.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "ruff (>=0.0.241)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "urllib3 (<2.0)"] +docs = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "black (==23.7)", "gradio", "hf-doc-builder", "jedi", "mypy (==1.5.1)", "numpy", "pydantic (<2.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "ruff (>=0.0.241)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "urllib3 (<2.0)", "watchdog"] fastai = ["fastai (>=2.4)", "fastcore (>=1.3.27)", "toml"] -inference = ["aiohttp", "pydantic"] -quality = ["black (>=23.1,<24.0)", "mypy (==0.982)", "ruff (>=0.0.241)"] +inference = ["aiohttp", "pydantic (<2.0)"] +quality = ["black (==23.7)", "mypy (==1.5.1)", "ruff (>=0.0.241)"] tensorflow = ["graphviz", "pydot", "tensorflow"] -testing = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "jedi", "numpy", "pydantic", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "soundfile", "urllib3 (<2.0)"] +testing = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "jedi", "numpy", "pydantic (<2.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "soundfile", "urllib3 (<2.0)"] torch = ["torch"] -typing = ["pydantic", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3"] +typing = ["pydantic (<2.0)", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3"] [[package]] name = "idna" @@ -429,6 +442,14 @@ display = ["matplotlib (>=3.3.0)"] docs = ["ipython (>=7.0)", "matplotlib (>=3.3.0)", "mir-eval (>=0.5)", "numba (<0.50)", "numpydoc", "presets", "sphinx (!=1.3.1)", "sphinx-gallery (>=0.7)", "sphinx-multiversion (>=0.2.3)", "sphinx-rtd-theme (>=1.0.0,<2.0.0)", "sphinxcontrib-svg2pdfconverter"] tests = ["contextlib2", "matplotlib (>=3.3.0)", "pytest", "pytest-cov", "pytest-mpl", "samplerate", "soxr"] +[[package]] +name = "lit" +version = "17.0.2" +description = "A Software Testing Tool" +category = "main" +optional = false +python-versions = "*" + [[package]] name = "llvmlite" version = "0.41.0" @@ -470,14 +491,14 @@ testing = ["pytest"] [[package]] name = "markdown" -version = "3.4.4" +version = "3.5" description = "Python implementation of John Gruber's Markdown." category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] -docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.0)", "mkdocs-nature (>=0.4)"] +docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.5)", "mkdocs-gen-files", "mkdocs-literate-nav", "mkdocs-nature (>=0.6)", "mkdocs-section-index", "mkdocstrings[python]"] testing = ["coverage", "pyyaml"] [[package]] @@ -575,9 +596,133 @@ category = "main" optional = false python-versions = ">=3.9" +[[package]] +name = "nvidia-cublas-cu11" +version = "11.10.3.66" +description = "CUBLAS native runtime libraries" +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + +[[package]] +name = "nvidia-cuda-cupti-cu11" +version = "11.7.101" +description = "CUDA profiling tools runtime libs." +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + +[[package]] +name = "nvidia-cuda-nvrtc-cu11" +version = "11.7.99" +description = "NVRTC native runtime libraries" +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + +[[package]] +name = "nvidia-cuda-runtime-cu11" +version = "11.7.99" +description = "CUDA Runtime native Libraries" +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + +[[package]] +name = "nvidia-cudnn-cu11" +version = "8.5.0.96" +description = "cuDNN runtime libraries" +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + +[[package]] +name = "nvidia-cufft-cu11" +version = "10.9.0.58" +description = "CUFFT native runtime libraries" +category = "main" +optional = false +python-versions = ">=3" + +[[package]] +name = "nvidia-curand-cu11" +version = "10.2.10.91" +description = "CURAND native runtime libraries" +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + +[[package]] +name = "nvidia-cusolver-cu11" +version = "11.4.0.1" +description = "CUDA solver native runtime libraries" +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + +[[package]] +name = "nvidia-cusparse-cu11" +version = "11.7.4.91" +description = "CUSPARSE native runtime libraries" +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + +[[package]] +name = "nvidia-nccl-cu11" +version = "2.14.3" +description = "NVIDIA Collective Communication Library (NCCL) Runtime" +category = "main" +optional = false +python-versions = ">=3" + +[[package]] +name = "nvidia-nvtx-cu11" +version = "11.7.91" +description = "NVIDIA Tools Extension" +category = "main" +optional = false +python-versions = ">=3" + +[package.dependencies] +setuptools = "*" +wheel = "*" + [[package]] name = "packaging" -version = "23.1" +version = "23.2" description = "Core utilities for Python packages" category = "main" optional = false @@ -591,10 +736,48 @@ category = "main" optional = false python-versions = ">=3.9" +[package.dependencies] +numpy = {version = ">=1.23.2", markers = "python_version >= \"3.11\""} +python-dateutil = ">=2.8.2" +pytz = ">=2020.1" +tzdata = ">=2022.1" + +[package.extras] +all = ["PyQt5 (>=5.15.6)", "SQLAlchemy (>=1.4.36)", "beautifulsoup4 (>=4.11.1)", "bottleneck (>=1.3.4)", "dataframe-api-compat (>=0.1.7)", "fastparquet (>=0.8.1)", "fsspec (>=2022.05.0)", "gcsfs (>=2022.05.0)", "html5lib (>=1.1)", "hypothesis (>=6.46.1)", "jinja2 (>=3.1.2)", "lxml (>=4.8.0)", "matplotlib (>=3.6.1)", "numba (>=0.55.2)", "numexpr (>=2.8.0)", "odfpy (>=1.4.1)", "openpyxl (>=3.0.10)", "pandas-gbq (>=0.17.5)", "psycopg2 (>=2.9.3)", "pyarrow (>=7.0.0)", "pymysql (>=1.0.2)", "pyreadstat (>=1.1.5)", "pytest (>=7.3.2)", "pytest-asyncio (>=0.17.0)", "pytest-xdist (>=2.2.0)", "pyxlsb (>=1.0.9)", "qtpy (>=2.2.0)", "s3fs (>=2022.05.0)", "scipy (>=1.8.1)", "tables (>=3.7.0)", "tabulate (>=0.8.10)", "xarray (>=2022.03.0)", "xlrd (>=2.0.1)", "xlsxwriter (>=3.0.3)", "zstandard (>=0.17.0)"] +aws = ["s3fs (>=2022.05.0)"] +clipboard = ["PyQt5 (>=5.15.6)", "qtpy (>=2.2.0)"] +compression = ["zstandard (>=0.17.0)"] +computation = ["scipy (>=1.8.1)", "xarray (>=2022.03.0)"] +consortium-standard = ["dataframe-api-compat (>=0.1.7)"] +excel = ["odfpy (>=1.4.1)", "openpyxl (>=3.0.10)", "pyxlsb (>=1.0.9)", "xlrd (>=2.0.1)", "xlsxwriter (>=3.0.3)"] +feather = ["pyarrow (>=7.0.0)"] +fss = ["fsspec (>=2022.05.0)"] +gcp = ["gcsfs (>=2022.05.0)", "pandas-gbq (>=0.17.5)"] +hdf5 = ["tables (>=3.7.0)"] +html = ["beautifulsoup4 (>=4.11.1)", "html5lib (>=1.1)", "lxml (>=4.8.0)"] +mysql = ["SQLAlchemy (>=1.4.36)", "pymysql (>=1.0.2)"] +output-formatting = ["jinja2 (>=3.1.2)", "tabulate (>=0.8.10)"] +parquet = ["pyarrow (>=7.0.0)"] +performance = ["bottleneck (>=1.3.4)", "numba (>=0.55.2)", "numexpr (>=2.8.0)"] +plot = ["matplotlib (>=3.6.1)"] +postgresql = ["SQLAlchemy (>=1.4.36)", "psycopg2 (>=2.9.3)"] +spss = ["pyreadstat (>=1.1.5)"] +sql-other = ["SQLAlchemy (>=1.4.36)"] +test = ["hypothesis (>=6.46.1)", "pytest (>=7.3.2)", "pytest-asyncio (>=0.17.0)", "pytest-xdist (>=2.2.0)"] +xml = ["lxml (>=4.8.0)"] + +[[package]] +name = "pandas" +version = "2.1.1" +description = "Powerful data structures for data analysis, time series, and statistics" +category = "main" +optional = false +python-versions = ">=3.9" + [package.dependencies] numpy = [ {version = ">=1.22.4", markers = "python_version < \"3.11\""}, - {version = ">=1.23.2", markers = "python_version >= \"3.11\""}, + {version = ">=1.23.2", markers = "python_version == \"3.11\""}, ] python-dateutil = ">=2.8.2" pytz = ">=2020.1" @@ -657,7 +840,7 @@ numpy = "*" [[package]] name = "platformdirs" -version = "3.10.0" +version = "3.11.0" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "main" optional = false @@ -699,11 +882,11 @@ xxhash = ["xxhash (>=1.4.3)"] [[package]] name = "psutil" -version = "5.9.5" +version = "5.9.6" description = "Cross-platform lib for process and system monitoring in Python." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" [package.extras] test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"] @@ -740,7 +923,7 @@ test = ["coverage (>=4.2)", "lxml", "pytest (>=5)", "pytest-cov", "pytest-mock"] [[package]] name = "pyright" -version = "1.1.325" +version = "1.1.331" description = "Command line wrapper for pyright" category = "dev" optional = false @@ -755,7 +938,7 @@ dev = ["twine (>=3.4.1)"] [[package]] name = "pytest" -version = "7.4.1" +version = "7.4.2" description = "pytest: simple powerful testing with Python" category = "dev" optional = false @@ -815,7 +998,7 @@ python-versions = ">=3.6" [[package]] name = "rapidfuzz" -version = "3.2.0" +version = "3.4.0" description = "rapid fuzzy string matching" category = "main" optional = false @@ -826,11 +1009,11 @@ full = ["numpy"] [[package]] name = "regex" -version = "2023.8.8" +version = "2023.10.3" description = "Alternative regular expression module, to replace re." category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "requests" @@ -904,7 +1087,7 @@ torch = ["safetensors[numpy]", "torch (>=1.10)"] [[package]] name = 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evaluate = "^0.4.0" accelerate = "^0.22.0" jiwer = "^3.0.3" sounddevice = "^0.4.6" -torch = "^2.1.0" +torch = ">=2.0.0, !=2.0.1, !=2.1.0" pedalboard = "^0.8.3" [tool.poetry.dev-dependencies] From 4c21ff87a176b0b6deaae816cf7922e2fd0c1e09 Mon Sep 17 00:00:00 2001 From: Harry Keightley Date: Mon, 16 Oct 2023 10:17:11 +1000 Subject: [PATCH 3/8] Allow `Job`s to be constructed from dictionaries --- elpis/models/job.py | 17 ++++++++++++++--- 1 file changed, 14 insertions(+), 3 deletions(-) diff --git a/elpis/models/job.py b/elpis/models/job.py index fa146a8..a421d16 100644 --- a/elpis/models/job.py +++ b/elpis/models/job.py @@ -2,7 +2,7 @@ from dataclasses import dataclass, field from pathlib import Path -from typing import List, Optional +from typing import Any, Dict, List, Optional from transformers import HfArgumentParser, TrainingArguments @@ -289,12 +289,12 @@ def parser(): return HfArgumentParser((ModelArguments, DataArguments, TrainingArguments)) # type: ignore @classmethod - def from_args(cls) -> Job: + def from_args(cls, args=None) -> Job: ( model_args, data_args, training_args, - ) = Job.parser().parse_args_into_dataclasses() + ) = Job.parser().parse_args_into_dataclasses(args) return cls( model_args=model_args, data_args=data_args, training_args=training_args ) @@ -309,3 +309,14 @@ def from_json(cls, file: Path) -> Job: return cls( model_args=model_args, data_args=data_args, training_args=training_args ) + + @classmethod + def from_dict(cls, data: Dict[str, Any]) -> Job: + ( + model_args, + data_args, + training_args, + ) = Job.parser().parse_dict(data) + return cls( + model_args=model_args, data_args=data_args, training_args=training_args + ) From e05981cb981615e793f584bcbe6405505f211401 Mon Sep 17 00:00:00 2001 From: Harry Keightley Date: Mon, 16 Oct 2023 11:40:53 +1000 Subject: [PATCH 4/8] Set seed before training and log when train/eval are skipped. --- elpis/trainer/trainer.py | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/elpis/trainer/trainer.py b/elpis/trainer/trainer.py index eb1e2dd..a485500 100644 --- a/elpis/trainer/trainer.py +++ b/elpis/trainer/trainer.py @@ -13,6 +13,7 @@ AutoTokenizer, Trainer, Wav2Vec2Processor, + set_seed, ) from transformers.trainer_utils import get_last_checkpoint, is_main_process @@ -46,6 +47,8 @@ def run_job( cache_dir = job.model_args.cache_dir Path(output_dir).mkdir(exist_ok=True, parents=True) + set_seed(job.training_args.seed) + logger.info("Preparing Datasets...") config = create_config(job) dataset = create_dataset(job) @@ -256,6 +259,7 @@ def last_checkpoint(job: Job) -> Optional[str]: def train(job: Job, trainer: Trainer, dataset: DatasetDict): if not job.training_args.do_train: + logger.info("Skipping training: `job.training_args.do_train` is false.") return checkpoint = last_checkpoint(job) @@ -283,6 +287,7 @@ def train(job: Job, trainer: Trainer, dataset: DatasetDict): def evaluate(job: Job, trainer: Trainer, dataset: DatasetDict): if not job.training_args.do_eval: + logger.info("Skipping eval: `job.training_args.do_eval` is false.") return logger.info("*** Evaluate ***") From a09769224ea836c750bc1fc3952b4ada18e1c3b7 Mon Sep 17 00:00:00 2001 From: Harry Keightley Date: Mon, 16 Oct 2023 11:41:31 +1000 Subject: [PATCH 5/8] Update `clean_text` parameters to be more general (punc -> char) --- elpis/datasets/__init__.py | 2 +- elpis/datasets/clean_text.py | 24 +++++++++++++++--------- elpis/datasets/preprocessing.py | 4 ++-- 3 files changed, 18 insertions(+), 12 deletions(-) diff --git a/elpis/datasets/__init__.py b/elpis/datasets/__init__.py index 37e9e2d..14561d2 100644 --- a/elpis/datasets/__init__.py +++ b/elpis/datasets/__init__.py @@ -1,6 +1,6 @@ from elpis.datasets.dataset import CleaningOptions, Dataset, ProcessingBatch from elpis.datasets.preprocessing import process_batch -from elpis.datasets.processing import create_dataset, prepare_dataset +from elpis.datasets.processing import prepare_dataset, create_dataset __all__ = [ "CleaningOptions", diff --git a/elpis/datasets/clean_text.py b/elpis/datasets/clean_text.py index 76b445d..ee0754c 100644 --- a/elpis/datasets/clean_text.py +++ b/elpis/datasets/clean_text.py @@ -5,31 +5,37 @@ def clean_text( text: str, words_to_remove: Optional[List[str]] = None, - punctuation_to_explode: str = "", - punctuation_to_remove: str = "", + characters_to_explode: str = "", + characters_to_remove: str = "", + to_lower=True, ) -> str: """Cleans the text based on the supplied options. Parameters: text: The text to clean. - options: The cleaning options. + words_to_remove: Words to remove from the text. + characters_to_remove: A string of chars to remove from the text. + characters_to_explode: A string of chars to replace with spaces in the text. + to_lower: True iff the resulting text should be converted to lower case. + Converts to uppercase if False. Returns: The cleaned text """ - words = text.upper().split() + words = text.split() if words_to_remove is not None: words = filter(lambda word: word not in words_to_remove, words) - if punctuation_to_explode != "": - words = map(lambda word: explode(word, punctuation_to_explode), words) + if characters_to_explode != "": + words = map(lambda word: explode(word, characters_to_explode), words) - if punctuation_to_remove != "": - words = map(lambda word: collapse(word, punctuation_to_remove), words) + if characters_to_remove != "": + words = map(lambda word: collapse(word, characters_to_remove), words) result = " ".join(words).strip() - return remove_consecutive_spaces(result) + result = remove_consecutive_spaces(result) + return result.lower() if to_lower else result.upper() def explode(text: str, pattern: str) -> str: diff --git a/elpis/datasets/preprocessing.py b/elpis/datasets/preprocessing.py index 29307d1..d2cdfe0 100644 --- a/elpis/datasets/preprocessing.py +++ b/elpis/datasets/preprocessing.py @@ -63,8 +63,8 @@ def clean_annotation( transcript = clean_text( text=annotation.transcript, words_to_remove=cleaning_options.words_to_remove, - punctuation_to_explode=cleaning_options.punctuation_to_explode, - punctuation_to_remove=cleaning_options.punctuation_to_remove, + characters_to_explode=cleaning_options.punctuation_to_explode, + characters_to_remove=cleaning_options.punctuation_to_remove, ) result = copy(annotation) result.transcript = transcript From 12e2b41c3f9801f66342bb5491b4cba7af773e4e Mon Sep 17 00:00:00 2001 From: Harry Keightley Date: Mon, 16 Oct 2023 11:42:59 +1000 Subject: [PATCH 6/8] Allow creation of datasets from huggingface. Run cleaning and sample constraints on constructed datasets. --- elpis/datasets/processing.py | 96 ++++++++++++++++++++++++++++++- elpis/models/__init__.py | 12 +++- elpis/models/job.py | 32 ++++++++--- tests/datasets/test_processing.py | 6 +- 4 files changed, 134 insertions(+), 12 deletions(-) diff --git a/elpis/datasets/processing.py b/elpis/datasets/processing.py index 085821a..5eec97f 100644 --- a/elpis/datasets/processing.py +++ b/elpis/datasets/processing.py @@ -6,12 +6,20 @@ from loguru import logger from transformers import AutoFeatureExtractor, AutoTokenizer +from elpis.datasets.clean_text import clean_text from elpis.models.job import Job LOGGING_TRANSCRIPT_SAMPLE = 2 -def create_dataset( +def create_dataset(job: Job) -> DatasetDict: + if Path(job.data_args.dataset_name_or_path).is_dir(): + return create_local_dataset(job) + + return create_hf_dataset(job) + + +def create_local_dataset( job: Job, test_size: float = 0.2, ) -> DatasetDict: @@ -65,6 +73,45 @@ def resolve_audio_path(row: Dict[str, Any]) -> Dict[str, Any]: return dataset +def create_hf_dataset(job: Job) -> DatasetDict: + dataset = DatasetDict() + data_args = job.data_args + + if job.training_args.do_train: + dataset["train"] = load_dataset( + data_args.dataset_name_or_path, + data_args.dataset_config_name, + split=data_args.train_split_name, + token=data_args.token, + ) + + if data_args.audio_column_name not in dataset["train"].column_names: + raise ValueError( + f"audio_column_name '{data_args.audio_column_name}' not found" + f" in dataset '{data_args.dataset_name_or_path}'." + " Make sure to set `audio_column_name` to the correct audio column - one of" + f" {', '.join(dataset['train'].column_names)}." + ) + + if data_args.text_column_name not in dataset["train"].column_names: + raise ValueError( + f"text_column_name {data_args.text_column_name} not found" + f" in dataset '{data_args.dataset_name_or_path}'. " + "Make sure to set `text_column_name` to the correct text column - one of " + f"{', '.join(dataset['train'].column_names)}." + ) + + if job.training_args.do_eval: + dataset["eval"] = load_dataset( + data_args.dataset_name_or_path, + data_args.dataset_config_name, + split=data_args.eval_split_name, + token=data_args.token, + ) + + return dataset + + def prepare_dataset( job: Job, tokenizer: AutoTokenizer, @@ -77,6 +124,8 @@ def prepare_dataset( dataset: The dataset on which to apply the preprocessing processor: The processor to apply over the dataset """ + dataset = clean_dataset(job, dataset) + dataset = constrain_to_max_samples(job, dataset) # Load the audio data and resample if necessary. dataset = dataset.cast_column( @@ -131,3 +180,48 @@ def is_audio_in_length_range(length: int): logger.info(f"Test encoding labels: {dataset['train'][0]['labels']}") return dataset + + +def constrain_to_max_samples(job: Job, dataset: DatasetDict) -> DatasetDict: + max_train_samples = job.data_args.max_train_samples + max_eval_samples = job.data_args.max_eval_samples + + if job.training_args.do_train and max_train_samples is not None: + dataset["train"] = dataset["train"].select(range(max_train_samples)) + + if job.training_args.do_eval and max_eval_samples is not None: + dataset["eval"] = dataset["eval"].select(range(max_eval_samples)) + + return dataset + + +def clean_dataset(job: Job, dataset: DatasetDict) -> DatasetDict: + if not job.data_args.do_clean: + return dataset + + text_column = job.data_args.text_column_name + + def clean(batch: Dict[str, Any]): + characters_to_remove = "".join(job.data_args.chars_to_remove or []) + characters_to_explode = "".join(job.data_args.chars_to_explode or []) + + batch[text_column] = ( + clean_text( + batch[text_column], + words_to_remove=job.data_args.words_to_remove, + characters_to_remove=characters_to_remove, + characters_to_explode=characters_to_explode, + to_lower=job.data_args.do_lower_case or True, + ) + + " " # Note: not sure why this is necessary, but saw in hf docs. + ) + + return batch + + with job.training_args.main_process_first(desc="Dataset cleaning."): + dataset = dataset.map( + clean, + desc="Cleaning the dataset and standardizing case.", + ) + + return dataset diff --git a/elpis/models/__init__.py b/elpis/models/__init__.py index 33ec9f4..1de4029 100644 --- a/elpis/models/__init__.py +++ b/elpis/models/__init__.py @@ -1,5 +1,15 @@ from elpis.models.annotation import Annotation from elpis.models.elan_options import ElanOptions, ElanTierSelector +from elpis.models.job import DataArguments, Job, ModelArguments from elpis.models.vocab import VOCAB_FILE, Vocab -__all__ = ["Annotation", "ElanOptions", "ElanTierSelector", "Vocab", "VOCAB_FILE"] +__all__ = [ + "Annotation", + "ElanOptions", + "ElanTierSelector", + "Job", + "Vocab", + "VOCAB_FILE", + "DataArguments", + "ModelArguments", +] diff --git a/elpis/models/job.py b/elpis/models/job.py index a421d16..9b99bb3 100644 --- a/elpis/models/job.py +++ b/elpis/models/job.py @@ -186,11 +186,33 @@ class DataArguments: ) }, ) - chars_to_ignore: Optional[List[str]] = list_field( + do_clean: bool = field( + default=True, + metadata={"help": "True if the dataset should be cleaned before use."}, + ) + words_to_remove: Optional[List[str]] = list_field( + default=[], + metadata={ + "help": "A list of words to remove from the transcripts during dataset cleaning." + }, + ) + chars_to_remove: Optional[List[str]] = list_field( + default=[], + metadata={ + "help": "A list of characters to remove from the transcripts during dataset cleaning." + }, + ) + chars_to_explode: Optional[List[str]] = list_field( + default=[], + metadata={ + "help": "A list of characters to replace with spaces in the transcripts during dataset cleaning." + }, + ) + do_lower_case: Optional[bool] = field( default=None, - metadata={"help": "A list of characters to remove from the transcripts."}, + metadata={"help": "Whether the target text should be lower cased."}, ) - eval_metrics: List[str] = list_field( + eval_metrics: List[str] = list_field( # type: ignore default=DEFAULT_METRICS, metadata={ "help": "A list of metrics the model should be evaluated on. E.g. `('wer', 'cer')`" @@ -270,10 +292,6 @@ class DataArguments: ) }, ) - do_lower_case: Optional[bool] = field( - default=None, - metadata={"help": "Whether the target text should be lower cased."}, - ) @dataclass diff --git a/tests/datasets/test_processing.py b/tests/datasets/test_processing.py index f671e60..fa28f8e 100644 --- a/tests/datasets/test_processing.py +++ b/tests/datasets/test_processing.py @@ -5,13 +5,13 @@ from loguru import logger from transformers import TrainingArguments -from elpis.datasets.processing import create_dataset +from elpis.datasets.processing import create_local_dataset from elpis.models.job import DataArguments, Job, ModelArguments DATA_PATH = Path(__file__).parent.parent / "data" / "processing" -def test_create_dataset(tmp_path: Path): +def test_create_local_dataset(tmp_path: Path): cache_dir = tmp_path / "cache" dataset_dir = tmp_path / "dataset" model_dir = tmp_path / "model" @@ -39,6 +39,6 @@ def test_create_dataset(tmp_path: Path): ), ) - dataset = create_dataset(job) + dataset = create_local_dataset(job) assert "train" in dataset assert "eval" in dataset From 2f0df2ff8977cbec56911a5994b46654a83f2430 Mon Sep 17 00:00:00 2001 From: Harry Keightley Date: Tue, 17 Oct 2023 17:22:48 +1000 Subject: [PATCH 7/8] Allow training on hf datasets --- elpis/datasets/processing.py | 61 ++++++++++++------ elpis/models/job.py | 6 ++ elpis/models/vocab.py | 2 + elpis/trainer/trainer.py | 116 ++++++++++++++++++++++++----------- hf_example.py | 86 ++++++++++++++++++++++++++ 5 files changed, 215 insertions(+), 56 deletions(-) create mode 100644 hf_example.py diff --git a/elpis/datasets/processing.py b/elpis/datasets/processing.py index 5eec97f..29c09de 100644 --- a/elpis/datasets/processing.py +++ b/elpis/datasets/processing.py @@ -2,7 +2,14 @@ from pathlib import Path from typing import Any, Dict, List -from datasets import Audio, DatasetDict, load_dataset +from datasets import ( + Audio, + Dataset, + DatasetDict, + IterableDataset, + IterableDatasetDict, + load_dataset, +) from loguru import logger from transformers import AutoFeatureExtractor, AutoTokenizer @@ -12,7 +19,7 @@ LOGGING_TRANSCRIPT_SAMPLE = 2 -def create_dataset(job: Job) -> DatasetDict: +def create_dataset(job: Job) -> DatasetDict | IterableDatasetDict: if Path(job.data_args.dataset_name_or_path).is_dir(): return create_local_dataset(job) @@ -73,14 +80,18 @@ def resolve_audio_path(row: Dict[str, Any]) -> Dict[str, Any]: return dataset -def create_hf_dataset(job: Job) -> DatasetDict: - dataset = DatasetDict() +def create_hf_dataset(job: Job) -> DatasetDict | IterableDatasetDict: data_args = job.data_args + dataset = DatasetDict() + if data_args.stream_dataset: + dataset = IterableDatasetDict() + if job.training_args.do_train: dataset["train"] = load_dataset( data_args.dataset_name_or_path, data_args.dataset_config_name, + streaming=data_args.stream_dataset, split=data_args.train_split_name, token=data_args.token, ) @@ -107,6 +118,7 @@ def create_hf_dataset(job: Job) -> DatasetDict: data_args.dataset_config_name, split=data_args.eval_split_name, token=data_args.token, + streaming=data_args.stream_dataset, ) return dataset @@ -116,8 +128,8 @@ def prepare_dataset( job: Job, tokenizer: AutoTokenizer, feature_extractor: AutoFeatureExtractor, - dataset: DatasetDict, -) -> DatasetDict: + dataset: DatasetDict | IterableDatasetDict, +) -> DatasetDict | IterableDatasetDict: """Runs some preprocessing over the given dataset. Parameters: @@ -163,18 +175,23 @@ def is_audio_in_length_range(length: int): with job.training_args.main_process_first(desc="dataset map preprocessing"): worker_count = job.data_args.preprocessing_num_workers + + kwargs = {} + if not job.data_args.stream_dataset: + kwargs = { + "num_proc": worker_count, + "desc": "Dataset Preprocessing", + } + dataset = dataset.map( _prepare_dataset, remove_columns=next(iter(dataset.values())).column_names, - num_proc=worker_count, - desc="preprocess datasets", + **kwargs, ) # filter data that is shorter than min_input_length dataset = dataset.filter( - is_audio_in_length_range, - num_proc=worker_count, - input_columns=["input_length"], + is_audio_in_length_range, input_columns=["input_length"], **kwargs ) logger.info(f"Test encoding labels: {dataset['train'][0]['labels']}") @@ -182,20 +199,29 @@ def is_audio_in_length_range(length: int): return dataset -def constrain_to_max_samples(job: Job, dataset: DatasetDict) -> DatasetDict: +def constrain_to_max_samples( + job: Job, dataset: DatasetDict | IterableDatasetDict +) -> DatasetDict | IterableDatasetDict: max_train_samples = job.data_args.max_train_samples max_eval_samples = job.data_args.max_eval_samples + def take(n: int, dataset: Dataset | IterableDataset) -> Dataset | IterableDataset: + if job.data_args.stream_dataset: + return dataset.take(n) # type: ignore + return dataset.select(range(n)) # type: ignore + if job.training_args.do_train and max_train_samples is not None: - dataset["train"] = dataset["train"].select(range(max_train_samples)) + dataset["train"] = take(max_train_samples, dataset["train"]) # type: ignore if job.training_args.do_eval and max_eval_samples is not None: - dataset["eval"] = dataset["eval"].select(range(max_eval_samples)) + dataset["eval"] = take(max_eval_samples, dataset["eval"]) # type: ignore return dataset -def clean_dataset(job: Job, dataset: DatasetDict) -> DatasetDict: +def clean_dataset( + job: Job, dataset: DatasetDict | IterableDatasetDict +) -> DatasetDict | IterableDatasetDict: if not job.data_args.do_clean: return dataset @@ -219,9 +245,6 @@ def clean(batch: Dict[str, Any]): return batch with job.training_args.main_process_first(desc="Dataset cleaning."): - dataset = dataset.map( - clean, - desc="Cleaning the dataset and standardizing case.", - ) + dataset = dataset.map(clean) return dataset diff --git a/elpis/models/job.py b/elpis/models/job.py index 9b99bb3..e8d7883 100644 --- a/elpis/models/job.py +++ b/elpis/models/job.py @@ -133,6 +133,12 @@ class DataArguments: "help": "The configuration name of the dataset to use (via the datasets library)." }, ) + stream_dataset: bool = field( + default=False, + metadata={ + "help": "Whether to stream the dataset as opposed to downloading it all at once." + }, + ) train_split_name: str = field( default="train+validation", metadata={ diff --git a/elpis/models/vocab.py b/elpis/models/vocab.py index 581bb09..61090bc 100644 --- a/elpis/models/vocab.py +++ b/elpis/models/vocab.py @@ -4,6 +4,8 @@ from pathlib import Path from typing import Any, Dict, Iterable, Optional, Set +from datasets import DatasetDict + VOCAB_FILE = "vocab.json" diff --git a/elpis/trainer/trainer.py b/elpis/trainer/trainer.py index a485500..c5f2690 100644 --- a/elpis/trainer/trainer.py +++ b/elpis/trainer/trainer.py @@ -1,9 +1,10 @@ import warnings from contextlib import nullcontext +from functools import partial, reduce from pathlib import Path -from typing import Optional +from typing import Any, Iterable, Optional -from datasets import DatasetDict +from datasets import Dataset, DatasetDict, IterableDataset, IterableDatasetDict from loguru import logger from transformers import ( AutoConfig, @@ -125,7 +126,7 @@ def create_config(job: Job) -> AutoConfig: def create_tokenizer( - job: Job, config: AutoConfig, dataset: DatasetDict + job: Job, config: AutoConfig, dataset: DatasetDict | IterableDatasetDict ) -> AutoTokenizer: tokenizer_name_or_path = job.model_args.tokenizer_name_or_path if tokenizer_name_or_path is not None: @@ -135,39 +136,6 @@ def create_tokenizer( trust_remote_code=job.data_args.trust_remote_code, ) - training_args = job.training_args - - # save vocab in training output dir - tokenizer_name_or_path = job.training_args.output_dir - vocab_file = Path(tokenizer_name_or_path) / VOCAB_FILE - - # Delete existing vocab file if overwriting - with training_args.main_process_first(): - if training_args.overwrite_output_dir and vocab_file.is_file(): - try: - vocab_file.unlink() - except OSError: - # in shared file-systems it might be the case that - # two processes try to delete the vocab file at the some time - pass - - # Build up a vocab from the dataset. - with training_args.main_process_first(desc="dataset map vocabulary creation"): - if not vocab_file.is_file(): - Path(tokenizer_name_or_path).mkdir(exist_ok=True, parents=True) - text_column = job.data_args.text_column_name - - vocab = Vocab.from_strings(dataset["train"][text_column]) - if "test" in dataset: - test_vocab = Vocab.from_strings(dataset["test"][text_column]) - vocab = vocab.merge(test_vocab) - - vocab.add(job.data_args.unk_token) - vocab.add(job.data_args.pad_token) - vocab.replace(" ", job.data_args.word_delimiter_token) - logger.info(f"Vocab: {vocab.vocab}") - vocab.save(vocab_file) - # If the tokenizer has just been created, # it is defined by `tokenizer_class` if present in config else by `model_type` tokenizer_kwargs = { @@ -179,14 +147,88 @@ def create_tokenizer( "do_lower_case": job.data_args.do_lower_case, } + tokenizer_folder = Path(job.training_args.output_dir) + create_vocab(job, dataset) + return AutoTokenizer.from_pretrained( - tokenizer_name_or_path, + str(tokenizer_folder), token=job.data_args.token, trust_remote_code=job.data_args.trust_remote_code, **tokenizer_kwargs, ) +def create_vocab(job: Job, dataset: DatasetDict | IterableDatasetDict) -> None: + """Effectful- creates a vocabulary.json file in the model output dir, for use in tokenization. + + Assumes that we are training our own tokenizer from scratch rather than + using a pretrained one. + + Parameters: + job: The job containing info about the required training tasks. + dataset: The dataset dictionary to create the vocabulary from. + """ + training_args = job.training_args + + # save vocab in training output dir + tokenizer_folder = Path(job.training_args.output_dir) + tokenizer_folder.mkdir(exist_ok=True, parents=True) + + vocab_file = tokenizer_folder / VOCAB_FILE + + # Delete existing vocab file if we are overwriting + with training_args.main_process_first(): + if training_args.overwrite_output_dir and vocab_file.is_file(): + try: + vocab_file.unlink() + except OSError: + # in shared file-systems it might be the case that + # two processes try to delete the vocab file at the some time + pass + + if vocab_file.is_file(): + return + + # Build up a vocab from the dataset. + with training_args.main_process_first(desc="Dataset Vocabulary Creation"): + + def extract_all_chars(text: list[str]): + all_text = " ".join(text) + vocab = list(set(all_text)) + return {"vocab": [vocab]} + + vocab_datasets = dataset.map( + extract_all_chars, + input_columns=job.data_args.text_column_name, + batched=True, + batch_size=-1, + # keep_in_memory=True, + # num_proc=job.data_args.preprocessing_num_workers, + remove_columns=dataset["train"].column_names, + ) + logger.info(dataset) + logger.info(f"Values: {vocab_datasets.values()}") + + def create_vocab_from_batches(batches: Iterable[dict[str, Any]]) -> Vocab: + vocabs = map(lambda batch: "".join(batch["vocab"][0]), batches) + return Vocab.from_strings(vocabs) + + if job.data_args.stream_dataset: + splits: Iterable[IterableDataset] = vocab_datasets.values() + vocabs = map(create_vocab_from_batches, splits) + vocab = reduce(Vocab.merge, vocabs, Vocab({})) + else: + # Note: in this case the values() are datasets, which are treated + # as if they were batches. + vocab = create_vocab_from_batches(vocab_datasets.values()) + + vocab.add(job.data_args.unk_token) + vocab.add(job.data_args.pad_token) + vocab.replace(" ", job.data_args.word_delimiter_token) + logger.info(f"Created Vocab: {vocab}") + vocab.save(tokenizer_folder) + + def update_config(job: Job, config: AutoConfig, tokenizer: AutoTokenizer) -> None: config.update( # type: ignore { diff --git a/hf_example.py b/hf_example.py new file mode 100644 index 0000000..0e7356a --- /dev/null +++ b/hf_example.py @@ -0,0 +1,86 @@ +from pathlib import Path + +from transformers import TrainingArguments + +from elpis.models.job import DataArguments, Job, ModelArguments +from elpis.trainer.trainer import run_job +from elpis.transcriber.results import build_elan, build_text +from elpis.transcriber.transcribe import build_pipeline, transcribe + +DATASETS_PATH = Path(__file__).parent.parent.parent / "datasets" +DIGITS_PATH = DATASETS_PATH / "digits-preview" +TRANSCRIBE_AUDIO = DIGITS_PATH / "test/audio2.wav" + +print("------ Training files ------") +# Setup +tmp_path = Path("testdir") +# tmp_path = Path("/tmp") / "testscript" +model_dir = tmp_path / "model" +output_dir = tmp_path / "output" + +# Make all directories +for directory in model_dir, output_dir: + directory.mkdir(exist_ok=True, parents=True) + +# Train the model +job = Job( + model_args=ModelArguments( + "facebook/wav2vec2-base", + attention_dropout=0.1, + layerdrop=0.0, + freeze_feature_encoder=True, + ), + data_args=DataArguments( + dataset_name_or_path="mozilla-foundation/common_voice_11_0", + dataset_config_name="gn", + train_split_name="train", + text_column_name="sentence", + audio_column_name="audio", + min_duration_in_seconds=1, + max_duration_in_seconds=20, + max_train_samples=100, + do_clean=True, + # stream_dataset=True, + ), + training_args=TrainingArguments( + output_dir=str(model_dir), + overwrite_output_dir=True, + do_train=True, + do_eval=False, + per_device_train_batch_size=16, + per_device_eval_batch_size=1, + num_train_epochs=20, + learning_rate=1e-4, + group_by_length=True, + logging_steps=10, + save_total_limit=2, + ), +) + + +print("------ JOB ------") +print(job) +run_job(job) +print("------ TRAINED ------") + +# Perform inference with pipeline +print("------ INFER ------") +asr = build_pipeline( + pretrained_location=str(model_dir.absolute()), +) + +annotations = transcribe(TRANSCRIBE_AUDIO, asr) +print(build_text(annotations)) + +# Build output files +print("------ OUTPUT ------") +text_file = output_dir / "test.txt" + +with open(text_file, "w") as output_file: + output_file.write(build_text(annotations)) + +elan_file = output_dir / "test.eaf" +eaf = build_elan(annotations) +eaf.to_file(str(elan_file)) + +print("voila ;)") From b8d49bb2f7f9b9461bc90abba152a713edb5a675 Mon Sep 17 00:00:00 2001 From: Harry Keightley Date: Tue, 17 Oct 2023 17:31:56 +1000 Subject: [PATCH 8/8] Black formatting --- elpis/trainer/trainer.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/elpis/trainer/trainer.py b/elpis/trainer/trainer.py index c5f2690..aafd8e1 100644 --- a/elpis/trainer/trainer.py +++ b/elpis/trainer/trainer.py @@ -218,8 +218,8 @@ def create_vocab_from_batches(batches: Iterable[dict[str, Any]]) -> Vocab: vocabs = map(create_vocab_from_batches, splits) vocab = reduce(Vocab.merge, vocabs, Vocab({})) else: - # Note: in this case the values() are datasets, which are treated - # as if they were batches. + # Note: in this case the values() are datasets, which are treated + # as if they were batches. vocab = create_vocab_from_batches(vocab_datasets.values()) vocab.add(job.data_args.unk_token)