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parallel_lennard_jones_md

Prerequisites

  • Recent Python installation
  • Recent Qt installation with qmake
  • OpenMPI

Usage (see script for details)

  • Simply run the run.py Python script:

    python run.py

Usage on computer lab

  • You need to start mpd first:

    mpd &

Usage on Abel

  • Compile program with

    make -f make_abel

Custom geometries

  • See md_geometry.py and program/create_cylinder/create_cylinder.cpp
  • Good luck!
  • (In order to use md_statistics to calculate permeability, flow in z-direction is assumed)