Option to write TSV for each report table

[diekhans]

It would be beneficial for sqanti_qc to have an option to write TSV files for the tables to allow extended analysis. It seems the only choice now is to parse it out of the HTML.

[aarzalluz]

Hi @diekhans -is there any specific piece of information that you are missing? Everything in the report (both HTML and PDF) is calculated using either the classification or junctions files.

[diekhans]

I wanted to be write code to compare the results from two sqanti3 runs. Yes, I could have recalculated from the classification or junctions files, however it would be much easier to have access to the data supporting the report. Ángeles Arzalluz-Luque ***@***.***> writes:

…

Hi @diekhans -is there any specific piece of information that you are missing? Everything in the report (both HTML and PDF) is calculated using either the classification or junctions files. -- Reply to this email directly or view it on GitHub: #218 (comment) You are receiving this because you were mentioned. Message ID: ***@***.***> Hi ***@***.*** -is there any specific piece of information that you are missing? Everything in the report (both HTML and PDF) is calculated using either the classification or junctions files. -- Reply to this email directly, [2]view it on GitHub, or [3]unsubscribe. You are receiving this because you were mentioned. Message ID: ***@***.***> References 1. https://github.com/diekhans 2. #218 (comment) 3. https://github.com/notifications/unsubscribe-auth/AAA23ZP5IJXCNCN6IS6TSK3XW55JNANCNFSM6AAAAAA34KKSSU

[diekhans]

Bringing this back to life. To develop a comprehensive evaluation test suite for FLAIR, we want to be able to compare results using the evaluation summaries from SQANT3.
Parsing HTML, which might change, would be complex and not be robust. Thus
the need for this feature. TSV or JSON would be great.

These would be the primary evaluation tables (e.g., Global overview, Evaluation of FSM, Evaluation of ISM, etc).

FLAIR ticket is BrooksLabUCSC/flair#411

We would work closely with you on this feature