docker-compose.yml

version: "3.9"
networks:
  data-api:
    driver: bridge
    name: data-api
  data-annotation-stack:
    driver: bridge
    name: data-annotation-stack
services:
  rdb:
    container_name: data-service-rdb
    image: "postgres:15.1"
    ports:
      - 8032:$SQL_PORT
    environment:
      - POSTGRES_PASSWORD=$SQL_PASSWORD
      - POSTGRES_USER=$SQL_USER
      - POSTGRES_DB=$SQL_DB
    volumes:
      - tds_data:/var/lib/postgresql/data
    networks:
      - data-api
    healthcheck:
      test: [ "CMD-SHELL", "pg_isready -U ${SQL_USER} -d ${SQL_DB}" ]
      interval: 10s
      timeout: 5s
      retries: 5
  api:
    container_name: data-service-api
    build:
      context: ./
      dockerfile: docker/Dockerfile
    image: data-service
    ports:
      - "8001:8000"
    env_file:
      - api.env
    environment:
      - NEO4J_ENABLED
    networks:
      - data-annotation-stack
      - data-api
    depends_on:
      migrations:
        condition: service_completed_successfully
      graphdb:
        condition: service_started
      minio:
        condition: service_started
    volumes:
      - $PWD/tds:/api/tds
      - $PWD/migrations:/api/migrations
  graphdb:
    build:
      context: ./
      dockerfile: docker/Dockerfile.neo4j
    ports:
      - 7474:7474
      - 7687:7687
    environment:
      - NEO4J_AUTH=$NEO4J_AUTH
      - NEO4J_dbms_memory_pagecache_size=512M
    volumes:
      - neo4j_data:/data
    depends_on:
      rdb:
        condition: service_healthy
      migrations:
        condition: service_completed_successfully
    networks:
      - data-api
  minio:
    build:
      context: ./
      dockerfile: docker/Dockerfile.minio
    environment:
      MINIO_ROOT_USER: $MINIO_USER
      MINIO_ROOT_PASSWORD: $MINIO_PWD
    ports:
      - 9000:9000
      - 9001:9001
    volumes:
      - $PWD/data:/data
    networks:
      - data-api
      - data-annotation-stack
  elasticsearch:
    image: elasticsearch:${STACK_VERSION}
    environment:
      - discovery.type=single-node
      - ES_JAVA_OPTS=-Xms1g -Xmx1g
      - xpack.security.enabled=false
      - action.auto_create_index=false
    volumes:
      - elasticsearch_data:/usr/share/elasticsearch/data
    ports:
      - target: 9200
        published: 9200
    networks:
      - data-api
    healthcheck:
      test: curl http://localhost:9200/_cluster/health?wait_for_status=yellow || exit 1
      interval: 10s
      timeout: 20s
      retries: 5
  kibana:
    depends_on:
      - elasticsearch
    image: docker.elastic.co/kibana/kibana:${STACK_VERSION}
    volumes:
      - kibanadata:/usr/share/kibana/data
    ports:
      - ${KIBANA_PORT}:5601
    environment:
      - SERVERNAME=kibana
      - ELASTICSEARCH_HOSTS=http://elasticsearch:9200
      - ELASTICSEARCH_USERNAME=kibana_system
      - ELASTICSEARCH_PASSWORD=${KIBANA_PASSWORD}
    mem_limit: ${MEM_LIMIT}
    networks:
      - data-api 
      - data-annotation-stack
  migrations:
    container_name: data-service-migrations
    image: data-service
    command: ['/api/migrations/run_migrations.sh']
    env_file:
      - api.env
    environment:
      - SEED_DATA=true
    volumes:
      - $PWD:/api
    depends_on:
      rdb:
        condition: service_healthy
      elasticsearch:
        condition: service_healthy
      minio:
        condition: service_started
    networks:
      - data-api
volumes:
  tds_data:
    driver: local
  neo4j_data:
    driver: local
  elasticsearch_data:
    driver: local
  kibanadata:
    driver: local