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@Online{AcademicProgrammesHPC,
author = {{High-Performance Computing in Europe}},
title = {Academic Programmes},
url = {https://hpc-portal.eu/academic-programmes},
urldate = {2023-08-25},
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@Article{Ahn2014,
author = {Ahn, June and Pellicone, Anthony and Butler, Brian S.},
title = {Open badges for education: what are the implications at the intersection of open systems and badging?},
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@Article{Ahsan2023,
author = {Ahsan, Kamrul and Akbar, Suraiyah and Kam, Booi and Abdulrahman, Muhammad Dan-Asabe},
title = {Implementation of micro-credentials in higher education: A systematic literature review},
journal = {Education and Information Technologies},
year = {2023},
month = mar,
doi = {10.1007/s10639-023-11739-z},
publisher = {Springer Science and Business Media {LLC}},
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@InProceedings{Akoh2017,
author = {Akoh, Ben},
title = {Determinants of Mobile Learning in {I}ndigenous/Cultural Contexts: The Phenomenon in {C}anadian {F}irst {N}ations},
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publisher = {Springer International Publishing},
isbn = {978-3-319-74310-3},
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doi = {10.1007/978-3-319-74310-3_4},
address = {Cham, Switzerland},
issn = {1868-422X},
lccn = {2018930742},
eventdate = {2017-07-03/2017-07-06},
venue = {Dublin, Ireland},
}
@InProceedings{Alghamdi2017,
author = {Alghamdi, Jawaher and Holland, Charlotte},
title = {Game-Play: Effects of Online Gamified and Game-Based Learning on Dispositions, Abilities and Behaviours of Primary Learners},
booktitle = {Tomorrow's Learning: Involving Everyone},
year = {2017},
editor = {Tatnall, Arthur and Webb, Mary},
booksubtitle = {Learning with and about Technologies and Computing},
volume = {515},
series = {{IFIP} Advances in Information and Communication Technology},
publisher = {Springer International Publishing},
isbn = {978-3-319-74310-3},
pages = {55--63},
doi = {10.1007/978-3-319-74310-3_7},
address = {Cham, Switzerland},
issn = {1868-422X},
lccn = {2018930742},
eventdate = {2017-07-03/2017-07-06},
venue = {Dublin, Ireland},
}
@Online{AlgorithmicBattle,
author = {{RWTH Aachen University}},
title = {Algorithmic Battle},
url = {https://tcs.rwth-aachen.de/lehre/algobattle/WS2023/},
urldate = {2023-07-03},
}
@TechReport{Alibay2022,
author = {Alibay, Irfan and Barnoud, Jonathan and Beckstein, Oliver and Gowers, Richard J. and Naughton, Fiona and Wang, Lily},
title = {{MDAK}its: Supporting and promoting the development of community packages leveraging the {MDA}nalysis library [v0.1.0]},
institution = {MDAnalysis},
year = {2022},
type = {White Paper},
month = aug,
doi = {10.6084/m9.figshare.20520726.v1},
}
@TechReport{AllDigital2022,
author = {{ALL DIGITAL} and {HUAWEI} and {EY}},
title = {Strategies to address the digital skills gap in the {EU}},
institution = {Europeandigitalskills.eu},
year = {2022},
type = {White Paper},
month = apr,
url = {https://www.europeandigitalskills.eu/white-paper/},
publisher = {Huawei Technologies Co., Ltd},
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@Article{Alt2021,
author = {Alt, Dorit},
title = {Who benefits from digital badges? Motivational precursors of digital badge usages in higher education},
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month = jun,
pages = {6629--6640},
doi = {10.1007/s12144-021-02002-0},
publisher = {Springer Science and Business Media {LLC}},
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@Misc{Alves2021,
author = {Alves, Daniel and Isasi, Jennifer},
title = {Publica{\c{c}}{\~a}o do {P}rogramming {H}istorian em portugu{\^e}s},
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howpublished = {The Programming Historian blog},
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urldate = {2023-08-23},
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@Article{Ambite2021,
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journal = {{IEEE} Transactions on Emerging Topics in Computing},
year = {2021},
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number = {1},
month = jan,
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doi = {10.1109/tetc.2019.2903466},
publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
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editor = {Airasian, Peter W. and Cruikshank, Kathleen A. and Mayer, Richard E. and Pintrich, Paul R. and Raths, James and Wittrock, Merlin C.},
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titleaddon = {Abridged Edition},
publisher = {Addison Wesley Longman},
isbn = {0-8013-1903-X},
lccn = {00063423},
}
@Article{Anzt2021,
author = {Anzt, Hartwig and Bach, Felix and Druskat, Stephan and L\"{o}ffler, Frank and Loewe, Axel and Renard, Bernhard Y. and Seemann, Gunnar and Struck, Alexander and Achhammer, Elke and Aggarwal, Piush and Appel, Franziska and Bader, Michael and Brusch, Lutz and Busse, Christian and Chourdakis, Gerasimos and Dabrowski, Piotr Wojciech and Ebert, Peter and Flemisch, Bernd and Friedl, Sven and Fritzsch, Bernadette and Funk, Maximilian D. and Gast, Volker and Goth, Florian and Grad, Jean-No\"{e}l and Hegewald, Jan and Hermann, Sibylle and Hohmann, Florian and Janosch, Stephan and Kutra, Dominik and Linxweiler, Jan and Muth, Thilo and Peters-Kottig, Wolfgang and Rack, Fabian and Raters, Fabian H.C. and Rave, Stephan and Reina, Guido and Rei\ss{}ig, Malte and Ropinski, Timo and Schaarschmidt, Joerg and Seibold, Heidi and Thiele, Jan P. and Uekermann, Benjamin and Unger, Stefan and Weeber, Rudolf},
title = {An environment for sustainable research software in {G}ermany and beyond: current state, open challenges, and call for action [version 2; peer review: 2 approved]},
journal = {F1000Research},
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number = {295},
doi = {10.12688/f1000research.23224.2},
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@TechReport{Appel2021,
author = {Appel, Franziska and Loewe, Axel},
title = {{F}orschungssoftware - Nachhaltige {E}ntwicklung und {U}nterst\"{u}tzung},
year = {2021},
type = {IAMO Policy Brief},
number = {42},
address = {Halle (Saale), Saxony-Anhalt, Germany},
isbn = {978-3-95992-124-4},
publisher = {Leibniz Institute of Agricultural Development in Transition Economies (IAMO)},
url = {https://hdl.handle.net/10419/240937},
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@Article{Artaza2016,
author = {Artaza, Haydee and Chue Hong, Neil and Corpas, Manuel and Corpuz, Angel and Hooft, Rob W. W. and Jim{\'{e}}nez, Rafael C. and Lesko{\v{s}}ek, Brane and Olivier, Brett G. and Stourac, Jan and Svobodov{\'{a}} Va{\v{r}}ekov{\'{a}}, Radka and Van Parys, Thomas and Vaughan, Daniel},
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journal = {F1000Research},
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@Article{Astigarraga2022,
author = {Astigarraga, Julen and Cruz-Alonso, Ver{\'{o}}nica},
title = {{\textexclamdown}Se puede entender c{\'{o}}mo funcionan {G}it y {G}it{H}ub!},
journal = {Ecosistemas},
year = {2022},
volume = {31},
number = {1},
pages = {2332},
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publisher = {Asociacion Espanola de Ecologia Terrestre ({AEET})},
}
@misc{Athalye2023,
title = {The Missing Semester of Your {CS} Education},
url = {https://missing.csail.mit.edu/},
urldate = {2023-08-11},
howpublished = {MIT, Computer Science \& Artificial Intelligence Laboratory},
author = {Athalye, Anish and Gjengset, Jon and Gonzalez Ortiz, Jose Javier},
}
@Article{Attwood2015b,
author = {Attwood, Teresa K. and Bongcam-Rudloff, Erik and Brazas, Michelle E. and Corpas, Manuel and Gaudet, Pascale and Lewitter, Fran and Mulder, Nicola and Palagi, Patricia M. and Schneider, Maria Victoria and van Gelder, Celia W. G. and {GOBLET Consortium}},
title = {Correction: {GOBLET}: The Global Organisation for Bioinformatics Learning, Education and Training},
journal = {{PLOS} Computational Biology},
year = {2015},
volume = {11},
number = {5},
month = may,
pages = {e1004281},
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publisher = {Public Library of Science ({PLoS})},
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@Article{Attwood2017,
author = {Attwood, Teresa K. and Blackford, Sarah and Brazas, Michelle D. and Davies, Angela and Schneider, Maria Victoria},
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month = mar,
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publisher = {Oxford University Press ({OUP})},
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@Article{Atwood2015a,
author = {Atwood, Teresa K. and Bongcam-Rudloff, Erik and Brazas, Michelle E. and Corpas, Manuel and Gaudet, Pascale and Lewitter, Fran and Mulder, Nicola and Palagi, Patricia M. and Schneider, Maria Victoria and van Gelder, Celia W. G. and {GOBLET Consortium}},
title = {{GOBLET}: The Global Organisation for Bioinformatics Learning, Education and Training},
journal = {{PLOS} Computational Biology},
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publisher = {Public Library of Science ({PLoS})},
related = {Attwood2015b},
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@Online{AwesomeRSEEducationalResources,
author = {{Helmholtz Federated IT Services}},
title = {Awesome Educational Resources for Research Software Engineering},
url = {https://github.com/hifis-net/awesome-rse-education},
urldate = {2023-08-25},
}
@Online{AwesomeRSEPoliciesGuidelines,
author = {{Helmholtz Federated IT Services}},
title = {Awesome Research Software Engineering Policies and Guidelines},
url = {https://github.com/hifis-net/awesome-rse-policies},
urldate = {2023-08-25},
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@Article{Bacall2023,
author = {Bacall, Finn and Apaolaza, Aitor and Andrabi, Munazah and Child, Chris and Goble, Carole and Sand, Olivier and Botzki, Alexander},
title = {Making Bioinformatics Training Events and Material More Discoverable Using {TeSS}, the {ELIXIR} Training Portal},
journal = {Current Protocols},
year = {2023},
volume = {3},
number = {2},
month = feb,
doi = {10.1002/cpz1.682},
publisher = {Wiley},
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@InProceedings{Badreddin2019,
author = {Badreddin, Omar and Hamou-Lhadj, Wahab and Chauhan, Swapnil},
title = {Susereum: Towards a Reward Structure for Sustainable Scientific Research Software},
booktitle = {Proceedings of the 2019 {IEEE}/{ACM} 14\textsuperscript{th} International Workshop on Software Engineering for Science ({SE}4{S}cience)},
year = {2019},
month = may,
publisher = {IEEE},
doi = {10.1109/se4science.2019.00015},
isbn = {978-1-7281-2276-2},
eventdate = {2019-05-28/2019-05-28},
venue = {Montr{\'e}al, Qu{\'e}bec, Canada},
}
@Article{Bain2020,
author = {Bain, Stevie A. and Meagher, Thomas R. and Barker, Daniel},
title = {Design, delivery and evaluation of a bioinformatics education workshop for 13-16-year-olds},
journal = {Journal of Biological Education},
year = {2020},
volume = {56},
number = {5},
pages = {570--580},
month = dec,
doi = {10.1080/00219266.2020.1858932},
publisher = {Informa {UK} Limited},
}
@Article{Bain2022,
author = {Bain, Stevie A. and Plaisier, Heleen and Anderson, Felicity and Cook, Nicola and Crouch, Kathryn and Meagher, Thomas R. and Ritchie, Michael G. and Wallace, Edward W. J. and Barker, Daniel},
title = {Bringing bioinformatics to schools with the 4273pi project},
journal = {{PLOS} Computational Biology},
year = {2022},
volume = {18},
number = {1},
pages = {e1009705},
month = jan,
doi = {10.1371/journal.pcbi.1009705},
editor = {Francis Ouellette},
publisher = {Public Library of Science ({PLoS})},
}
@Article{Baker2016,
author = {Baker, James and Moore, Caitlin and Priego, Ernesto and Alegre, Raquel and Cope, Jez and Price, Ludi and Stephens, Owen and van Strien, Daniel and Wilson, Greg},
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journal = {Liber Quarterly},
year = {2016},
volume = {26},
number = {3},
month = nov,
pages = {141--162},
issn = {2213-056X},
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publisher = {Association of European Research Libraries (LIBER)},
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@Article{Balaban2021,
author = {Balaban, Gabriel and Grytten, Ivar and Rand, Knut Dagestad and Scheffer, Lonneke and Sandve, Geir Kjetil},
title = {Ten simple rules for quick and dirty scientific programming},
journal = {{PLOS} Computational Biology},
year = {2021},
volume = {17},
number = {3},
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editor = {Markel, Scott},
publisher = {Public Library of Science ({PLoS})},
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@InCollection{BaniBaker2021,
author = {Bani Baker, Qanita and Nuser, Maryam S.},
title = {Design Bioinformatics Curriculum Guidelines: Perspectives},
booktitle = {Your Passport to a Career in Bioinformatics},
year = {2021},
editor = {Suravajhala, Prashanth N.},
edition = {2},
publisher = {Springer Singapore},
isbn = {978-981-15-9544-8},
pages = {91--102},
doi = {10.1007/978-981-15-9544-8_10},
}
@Misc{Barker2022a,
author = {Barker, Michelle and Katz, Daniel S.},
title = {Overview of research software funding landscape},
year = {2022},
howpublished = {Zenodo},
doi = {10.5281/zenodo.6102487},
}
@Misc{Barker2022b,
author = {Barker, Michelle and Katz, Daniel S.},
title = {Encouraging entry, retention, diversity and inclusion in research software careers},
year = {2022},
howpublished = {Zenodo},
doi = {10.5281/zenodo.7117842},
}
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author = {Barone, Lindsay and Williams, Jason and Micklos, David},
title = {Unmet needs for analyzing biological big data: A survey of 704 {NSF} principal investigators},
journal = {{PLOS} Computational Biology},
year = {2017},
editor = {Ouellette, Francis},
volume = {13},
number = {10},
month = oct,
pages = {e1005755},
doi = {10.1371/journal.pcbi.1005755},
publisher = {Public Library of Science ({PLoS})},
related = {Barone2017b},
relatedstring = {Corrected in},
}
@Article{Barone2017b,
author = {{The \emph{PLOS Computational Biology} Staff}},
title = {Correction: Unmet needs for analyzing biological big data: A survey of 704 {NSF} principal investigators},
journal = {{PLOS} Computational Biology},
year = {2017},
volume = {13},
number = {11},
month = nov,
pages = {e1005858},
doi = {10.1371/journal.pcbi.1005858},
owner = {jgrad},
publisher = {Public Library of Science ({PLoS})},
timestamp = {2023.08.22},
}
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author = {Barr, Earl T. and Harman, Mark and McMinn, Phil and Shahbaz, Muzammil and Yoo, Shin},
title = {The Oracle Problem in Software Testing: A Survey},
journal = {{IEEE} Transactions on Software Engineering},
year = {2015},
volume = {41},
number = {5},
month = may,
pages = {507--525},
issn = {1939-3520},
doi = {10.1109/tse.2014.2372785},
publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
}
@TechReport{Bashir2020,
author = {Bashir, Sajitha and Miyamoto, Koji},
title = {Digital Skills: Frameworks and Programs},
institution = {The World Bank},
year = {2020},
month = apr,
url = {https://hdl.handle.net/10986/35080},
address = {Washington, DC},
}
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author = {Batut, B{\'e}r{\'e}nice and Hiltemann, Saskia and Bagnacani, Andrea and Baker, Dannon and Bhardwaj, Vivek and Blank, Clemens and Bretaudeau, Anthony and Brillet-Gu{\'e}guen, Loraine and {\v{C}}ech, Martin and Chilton, John and Clements, Dave and Doppelt-Azeroual, Olivia and Erxleben, Anika and Freeberg, Mallory Ann and Gladman, Simon and Hoogstrate, Youri and Hotz, Hans-Rudolf and Houwaart, Torsten and Jagtap, Pratik and Larivi{\`e}re, Delphine and Le Corguill{\'e}, Gildas and Manke, Thomas and Mareuil, Fabien and Ram{\'i}rez, Fidel and Ryan, Devon and Sigloch, Florian Christoph and Soranzo, Nicola and Wolff, Joachim and Videm, Pavankumar and Wolfien, Markus and Wubuli, Aisanjiang and Yusuf, Dilmurat and Taylor, James and Backofen, Rolf and Nekrutenko, Anton and Gr{\"u}ning, Bj{\"o}rn},
title = {Community-Driven Data Analysis Training for Biology},
journal = {Cell Systems},
year = {2018},
volume = {6},
number = {6},
month = jun,
pages = {752--758.e1},
issn = {2405-4712},
doi = {10.1016/j.cels.2018.05.012},
publisher = {Elsevier {BV}},
}
@Article{Baxter2006,
author = {Baxter, Susan M. and Day, Steven W. and Fetrow, Jacquelyn S. and Reisinger, Stephanie J.},
title = {Scientific Software Development Is Not an Oxymoron},
journal = {{PLoS} Computational Biology},
year = {2006},
volume = {2},
number = {9},
pages = {e87},
doi = {10.1371/journal.pcbi.0020087},
publisher = {Public Library of Science ({PLoS})},
}
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author = {Beard, Niall and Bacall, Finn and Nenadic, Aleksandra and Thurston, Milo and Goble, Carole A. and Sansone, Susanna-Assunta and Attwood, Teresa K.},
title = {{TeSS}: a platform for discovering life-science training opportunities},
journal = {Bioinformatics},
year = {2020},
editor = {Wren, Jonathan},
volume = {36},
number = {10},
month = feb,
pages = {3290--3291},
doi = {10.1093/bioinformatics/btaa047},
publisher = {Oxford University Press ({OUP})},
}
@Article{Beckman2021,
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title = {Implementing Version Control With {G}it and {G}it{H}ub as a Learning Objective in Statistics and Data Science Courses},
journal = {Journal of Statistics and Data Science Education},
year = {2021},
volume = {29},
number = {sup1},
pages = {S132--S144},
month = jan,
doi = {10.1080/10691898.2020.1848485},
publisher = {Informa {UK} Limited},
}
@TechReport{Bertuch2022,
author = {Bertuch, Oliver and Oliveira, Dennis and Schelhaas, Ute and Storm, Alexander},
title = {Guidelines for the development and distribution of software at {F}orschungszentrum {J}{\"u}lich},
year = {2022},
type = {FZJ Software Guideline},
number = {FZJ-2022-05939, Version 12.1},
month = nov,
url = {https://juser.fz-juelich.de/record/916100},
}
@online{BIOEXCEL,
title = {Professionals in Computational Biomolecular Research},
urldate = {2023-10-30},
abstract = {The BioExcel competency framework defines a series of competencies required of professionals in the field of computational biomolecular research. A competency is an observable ability of any professional, integrating multiple components such as knowledge, skills and behaviours. The competencies that an individual might need to fulfil a particular role are listed in reference profiles, which can be used to guide career choices},
howpublished = {https://competency.ebi.ac.uk/framework/bioexcel/3.0/carreer-profiles},
langid = {english},
}
@Online{BioinformaticsCertification,
author = {{International Society for Computational Biology}},
title = {Degree \& Certificate Programs in Bioinformatics},
url = {https://www.iscb.org/iscb-degree-certificate-programs},
urldate = {2023-07-20},
}
@Online{learnandteach,
author = {{The teachingRSE project}},
title = {Learning and teaching RSE},
url = {https://de-rse.org/learn-and-teach/},
urldate = {2024-02-22},
}
@Article{Bird2016,
title = {Using Metadata Actively},
volume = {11},
rights = {All rights reserved},
issn = {1746-8256},
doi = {10.2218/ijdc.v11i1.412},
number = {1},
journaltitle = {International Journal of Digital Curation},
author = {Bird, Colin and Coles, Simon and Garrelfs, Iris and Griffin, Tom and Hagdorn, Magnus and Klyne, Graham and Mineter, Mike and Willoughby, Cerys},
date = {2016},
}
@inproceedings{Blech2022,
author = {Blech, Christopher and Dreyer, Nils and Friebel, Bj{\"o}rn and R. Jacob, Christoph and Shamil Jassim, Mostafa and Jehl, Leander and Kapitza, R{\"u}diger and Krafczyk, Manfred and K{\"u}rner, Thomas and C. Langer, Sabine and Linxweiler, Jan and Mahhouk, Mohammad and Marcus, Sven and Messadi, Ines and Peters, S{\"o}ren and Pilawa, Jan-Marc and K. Sreekumar, Harikrishnan and Str{\"o}tgen, Robert and Stump, Katrin and Vogel, Arne and Wolter, Mario},
booktitle = {{campusSOURCE} Award 2022},
title = {{SURESOFT}: Towards Sustainable Research Software},
year = {2022},
month = jul,
eventdate = {2022-03-17},
eventitle = {CampusSource Conference},
venue = {FernUniversität in Hagen},
doi = {10.24355/dbbs.084-202210121528-0},
}
@Online{BluefieldIBMBadges,
author = {{Bluefield State}},
title = {{B}luefield State College Now Offering {IBM} Badge Certification},
url = {https://bluefieldstate.edu/community/news-and-events/bluefield-state-college-now-offering-ibm-badge-certification},
urldate = {2023-07-03},
}
@Article{Bolyen2018,
author = {Bolyen, Evan and Rideout, Jai Ram and Chase, John and Pitman, T. Anders and Shiffer, Arron and Mercurio, Willow and Dillon, Matthew R. and Caporaso, J. Gregory},
title = {An {I}ntroduction to {A}pplied {B}ioinformatics: a free, open, and interactive text.},
journal = {Journal of Open Source Education},
year = {2018},
volume = {1},
number = {5},
month = oct,
pages = {27},
doi = {10.21105/jose.00027},
publisher = {The Open Journal},
}
@InProceedings{BorrasGene2018,
author = {Borr{\'a}s-Gen{\'e}, Oriol},
title = {Use of digital badges for training in digital skills within higher education},
booktitle = {2018 International Symposium on Computers in Education ({SIIE})},
year = {2018},
publisher = {IEEE},
month = sep,
isbn = {978-1-5386-6505-3},
doi = {10.1109/siie.2018.8586734},
eventdate = {2018-09-19/2018-09-21},
venue = {Jerez, Spain},
}
@Article{Brauer2019,
author = {Brauer, Sanna and Korhonen, Anne-Maria and Siklander, Pirkko},
title = {Online scaffolding in digital open badge-driven learning},
journal = {Educational Research},
year = {2019},
volume = {61},
number = {1},
month = jan,
pages = {53--69},
doi = {10.1080/00131881.2018.1562953},
publisher = {Informa {UK} Limited},
}
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author = {Brazas, Michelle D. and Ouellette, B. F. Francis},
title = {Navigating the changing learning landscape: perspective from bioinformatics.ca},
journal = {Briefings in Bioinformatics},
year = {2013},
volume = {14},
number = {5},
month = mar,
pages = {556--562},
issn = {1477-4054},
doi = {10.1093/bib/bbt016},
publisher = {Oxford University Press ({OUP})},
}
@Article{Brazas2016,
author = {Brazas, Michelle D. and Ouellette, B. F. Francis},
title = {Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers},
journal = {{PLOS} Computational Biology},
year = {2016},
editor = {Lewitter, Fran},
volume = {12},
number = {6},
month = jun,
pages = {e1004916},
doi = {10.1371/journal.pcbi.1004916},
publisher = {Public Library of Science ({PLoS})},
}
@Article{Brazas2017a,
author = {Brazas, Michelle D. and Brooksbank, Cath and Jimenez, Rafael C. and Blackford, Sarah and Palagi, Patricia M. and De Las Rivas, Javier and Ouellette, B. F. Francis and Kumuthini, Judit and Korpelainen, Eija and Lewitter, Fran and van Gelder, Celia W.G. and Mulder, Nicola and Corpas, Manuel and Schneider, Maria Victoria and Tan, Tin Wee and Clements, Dave and Davies, Angela and Attwood, Teresa K.},
title = {A global perspective on bioinformatics training needs},
journal = {bioRxiv},
year = {2017},
month = feb,
pages = {098996},
doi = {10.1101/098996},
owner = {jgrad},
publisher = {Cold Spring Harbor Laboratory},
timestamp = {2023.08.29},
}
@Article{Brazas2017b,
author = {Brazas, Michelle D. and Blackford, Sarah and Attwood, Teresa K.},
title = {Plug gap in essential bioinformatics skills},
journal = {Nature},
year = {2017},
volume = {544},
number = {7649},
month = apr,
pages = {161--161},
doi = {10.1038/544161c},
publisher = {Springer Science and Business Media {LLC}},
}
@Article{Brito2020,
author = {Brito, Jaqueline J. and Li, Jun and Moore, Jason H. and Greene, Casey S. and Nogoy, Nicole A. and Garmire, Lana X. and Mangul, Serghei},
title = {Recommendations to enhance rigor and reproducibility in biomedical research},
journal = {GigaScience},
year = {2020},
volume = {9},
number = {6},
month = jun,
doi = {10.1093/gigascience/giaa056},
publisher = {Oxford University Press ({OUP})},
}
@Article{Brouat2022,
author = {Brouat, Sophie and Tolley, Clare and Bates, David W. and Jenson, James and Slight, Sarah P.},
title = {What unique knowledge and experiences do healthcare professionals have working in clinical informatics?},
journal = {Informatics in Medicine Unlocked},
year = {2022},
volume = {32},
pages = {101014},
issn = {2352-9148},
doi = {10.1016/j.imu.2022.101014},
publisher = {Elsevier {BV}},
}
@software{Brown2023,
author = {Sarah M Brown and
Karen Word and
Maneesha Sane and
Kelly Barnes and
Nathaniel Porter and
Philipp Matthias Schaefer and
Aleksandra Nenadic and
Toby Hodges and
Giordano Lipari and
Andrzej Aleksander Romaniuk and
Martino Sorbaro Sindaci and
amangoel185 and
Brynn Elliott and
Christian Kn{\"u}pfer and
jaguillette and
Jonathan Wheeler and
JorgeBCh and
Mark Tefero Kivumbi and
Adrian Pohl and
Andy Foster and
Annika Rockenberger and
Christopher Beltz and
Cora Assmann and
D{\'e}sir{\'e}e Treichler and
Erin Alison Becker and
Hao Ye and
James Deaton and
Jannetta Steyn and
Jeffrey Oliver and
Jeremy Guillette and
Joenio Marques da Costa and
Jon Wheeler and
Kelly Duffy and
Marcelina Nagales and
nikitabern and
Ragnhild Sundsbak and
raisaionin and
TM612},
title = {{carpentries/instructor-training: The Carpentries
Instructor Training Februrary 2023}},
month = feb,
year = 2023,
publisher = {Zenodo},
version = {v2023.02.06},
doi = {10.5281/zenodo.7612756},
}
@Article{Bryan2018,
author = {Bryan, Jennifer},
title = {Excuse Me, Do You Have a Moment to Talk About Version Control?},
journal = {The American Statistician},
year = {2018},
volume = {72},
number = {1},
pages = {20--27},
month = jan,
doi = {10.1080/00031305.2017.1399928},
publisher = {Informa {UK} Limited},
}
@Article{Cain2023,
author = {Cain, Jason Y. and Yu, Jessica S. and Bagheri, Neda},
title = {The \emph{in silico} lab: Improving academic code using lessons from biology},
journal = {Cell Systems},
year = {2023},
volume = {14},
number = {1},
pages = {1--6},
month = jan,
doi = {10.1016/j.cels.2022.11.006},
publisher = {Elsevier {BV}},
}
@Article{CanalesNegron2020,
author = {Canales-Negr{\'o}n, Ismael},
title = {Principios de dise{\~{n}}o de insignias digitales en programas de educaci{\'{o}}n continua profesional: una revisi{\'{o}}n exploratoria},
journal = {Revista Digital de Investigaci{\'{o}}n en Docencia Universitaria},
year = {2020},
volume = {14},
number = {2},
month = nov,
pages = {e1170},
issn = {2223-2516},
doi = {10.19083/ridu.2020.1170},
publisher = {Universidad Peruana de Ciencias Aplicadas},
}
@Article{Carey2018,
author = {Carey, Maureen A. and Papin, Jason A.},
title = {Ten simple rules for biologists learning to program},
journal = {{PLOS} Computational Biology},
year = {2018},
volume = {14},
number = {1},
pages = {e1005871},
month = jan,
doi = {10.1371/journal.pcbi.1005871},
editor = {Markel, Scott},
publisher = {Public Library of Science ({PLoS})},
}
@online{Carpentries,
author = {{The Carpentries}},
title = {The Carpentries},
url = {https://carpentries.org},
urldate = {2023-06-16},
}
@Online{CarpentriesBecomingInstructor,
author = {{The Carpentries}},
title = {Become a Carpentries Instructor},
url = {https://docs.carpentries.org/topic_folders/for_instructors/new_instructors.html},
urldate = {2023-07-12},
}
@online{CarpentriesCertificates,
author = {{The Carpentries}},
title = {Certificates for {T}he {C}arpentries},
url = {https://github.com/carpentries/learner-certificates},
urldate = {2023-06-19},
}
@Online{CarpentriesData,
title = {{Data Carpentry}},
url = {https://datacarpentry.org/},
urldate = {2023-07-25},
}
@Online{CarpentriesHPC,
title = {{HPC Carpentry}},
url = {https://www.hpc-carpentry.org/},
urldate = {2023-07-25},
}
@online{CarpentriesIncubator,
author = {{The Carpentries}},
title = {The Carpentries Incubator},
url = {https://carpentries-incubator.org/},
urldate = {2023-06-16},
}
@online{CarpentriesInstructorBadges,
author = {{The Carpentries}},
title = {What does a badge mean?},
subtitle = {Instructor Training},
url = {https://carpentries.github.io/instructor-training/aio.html#what-does-a-badge-mean},
urldate = {2023-06-19},
}
@Online{CarpentriesLearnerCertificates,
author = {{The Carpentries}},
title = {Learner Certificates},
url = {https://docs.carpentries.org/topic_folders/hosts_instructors/certificates.html},
urldate = {2023-07-12},
}
@Online{CarpentriesLibrary,
title = {{Library Carpentry}},
url = {https://librarycarpentry.org/index.html},
urldate = {2023-07-25},
}
@Online{CarpentriesSoftware,
title = {{Software Carpentry}},
url = {https://software-carpentry.org/},
urldate = {2023-07-25},
}
@online{CarpentriesSpanish,
author = {{The Carpentries}},
title = {Carpentries-es},
url = {https://carpentries.org/latam-tf/},
urldate = {2023-06-19},
}
@TechReport{Carretero2017,
author = {Carretero, Stephanie and Vuorikari, Riina and Punie, Yves},
title = {{DigComp} 2.1: The European Digital Competence Framework for Citizens},
institution = {Joint Research Centre (European Commission)},
year = {2017},
type = {Science for Policy report},
subtitle = {With eight proficiency levels and examples of use},
number = {JRC106281, EUR 28558 EN},
doi = {10.2760/38842},
address = {Luxembourg},
isbn = {978-92-79-68006-9},
issn = {1831-9424},
publisher = {Publications Office of the European Union},
}
@Misc{Carver2020,
author = {Carver, Jeffrey C. and Cosden, Ian A.},
title = {{IN}novative {T}raining {E}nabled by a {R}esearch {S}oftware {E}ngineering {C}ommunity of {T}rainers ({INTERSECT})},
year = {2020},
howpublished = {Zenodo},
month = aug,
doi = {10.5281/zenodo.4281287},
}
@InProceedings{Carver2021,
author = {Carver, Jeffrey C. and Cosden, Ian A. and Hill, Chris and Gesing, Sandra and Katz, Daniel S.},
title = {Sustaining Research Software via Research Software Engineers and Professional Associations},
booktitle = {Proceedings of the 2021 {IEEE}/{ACM} International Workshop on Body of Knowledge for Software Sustainability ({BoKSS})},
year = {2021},
eventdate = {2021-05-22/2021-05-30},
venue = {Virtual Event},
publisher = {IEEE},
month = jun,
isbn = {978-1-6654-4460-6},
doi = {10.1109/bokss52540.2021.00016},
address = {Los Alamitos, California, USA},
}
@online{CASTIEL2,
author = {{EuroHPC Joint Undertaking}},
title = {{EuroCC}~2 and {CASTIEL}~2: Promoting {HPC} to boost digital skills, jobs and industrial competitiveness in {E}urope},
url = {https://eurohpc-ju.europa.eu/eurocc-2-and-castiel-2-promoting-hpc-boost-digital-skills-jobs-and-industrial-competitiveness-europe-2023-02-03_en},
urldate = {2023-06-16},
}
@Article{Castro2023,
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editor = {Ouellette, Francis},
volume = {19},
number = {6},
month = jun,
pages = {e1011120},
doi = {10.1371/journal.pcbi.1011120},
publisher = {Public Library of Science ({PLoS})},
}
@TechReport{Centeno2022,
author = {Centeno, Clara},
title = {{E}uropean digital skills certificate feasibility study},
institution = {Joint Research Centre (European Commission)},
year = {2022},
type = {Conference and workshop report},
subtitle = {Report of the 1\textsuperscript{st} stakeholders' consultation (24\textsuperscript{th} {F}ebruary -- 12\textsuperscript{th} {M}arch 2021)},
number = {JRC128423},
month = feb,
doi = {10.2760/645292},
address = {Luxembourg},
isbn = {978-92-76-48565-0},
publisher = {Publications Office of the European Union},
}
@Article{Cereceda2020,
author = {Cereceda, Oihane and Quinn, Danielle E. A.},
title = {A graduate student perspective on overcoming barriers to interacting with open-source software},
journal = {FACETS},
year = {2020},
volume = {5},
number = {1},
pages = {289--303},
month = jan,
doi = {10.1139/facets-2019-0020},
editor = {Clendinneng, Debra},
publisher = {Canadian Science Publishing},
}
@Article{CetinkayaRundel2018,
author = {{\c{C}}etinkaya-Rundel, Mine and Rundel, Colin},
title = {Infrastructure and Tools for Teaching Computing Throughout the Statistical Curriculum},
journal = {The American Statistician},
year = {2018},
volume = {72},
number = {1},
pages = {58--65},
month = jan,
doi = {10.1080/00031305.2017.1397549},
publisher = {Informa {UK} Limited},
}
@TechReport{Chakroun2018,
author = {Chakroun, Borhene and Keevy, James},
title = {Digital credentialing: Implications for the recognition of learning across borders},
year = {2018},
number = {ED-2018/WS/29},
doi = {10.54675/sabo8911},
address = {Paris, France},
institution = {UNESCO},
}
@Article{Chang2021,
author = {Chang, Hui-Yin and Colby, Sean M. and Du, Xiuxia and Gomez, Javier D. and Helf, Maximilian J. and Kechris, Katerina and Kirkpatrick, Christine R. and Li, Shuzhao and Patti, Gary J. and Renslow, Ryan S. and Subramaniam, Shankar and Verma, Mukesh and Xia, Jianguo and Young, Jamey D.},
title = {A Practical Guide to Metabolomics Software Development},
journal = {Analytical Chemistry},
year = {2021},
volume = {93},
number = {4},
pages = {1912--1923},
month = jan,
doi = {10.1021/acs.analchem.0c03581},
publisher = {American Chemical Society ({ACS})},
}
@Misc{CHAOSSDEIBadging,
author = {{CHAOSS}},
title = {Overview of {D\&{}I} Badging},
year = {2020},
howpublished = {CHAOSS Community Handbook},
month = nov,
url = {https://handbook.chaoss.community/badging/},
urldate = {2023-06-23},
}
@Article{Cheng2019,
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title = {Using digital badges as goal-setting facilitators: a multiple case study},
journal = {Journal of Computing in Higher Education},
year = {2019},
volume = {32},
number = {2},
month = oct,
pages = {406--428},
doi = {10.1007/s12528-019-09240-z},
publisher = {Springer Science and Business Media {LLC}},
}
@InProceedings{Cherubini2007,
author = {Cherubini, Mauro and Venolia, Gina and DeLine, Rob and Ko, Amy J.},
title = {Let's Go to the Whiteboard: How and Why Software Developers Use Drawings},
booktitle = {Proceedings of the {SIGCHI} Conference on Human Factors in Computing Systems},
year = {2007},
eventdate = {2007-04-28/2007-05-03},
venue = {San Jose, California, USA},
publisher = {ACM},
month = apr,
isbn = {978-1-59593-593-9},
doi = {10.1145/1240624.1240714},
address = {New York, New York, USA},
}
@Article{Chicco2023,
author = {Chicco, Davide and Jurman, Giuseppe},
title = {Ten simple rules for providing bioinformatics support within a hospital},
journal = {BioData Mining},
year = {2023},
volume = {16},
number = {1},