New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

vqslod #3

Open

shajoezhu opened this issue Jun 11, 2020 · 0 comments

Member

shajoezhu commented Jun 11, 2020

for i in $(seq 1 1 14); do bcftools view -f "PASS" --include 'VQSLOD > 5' PG0389-C.wg.vcf.gz | grep -v "#" | grep Pf3D7_$(printf %02d $i)_v3 | wc -l; done

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment