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pom_lifelines.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<properties>
<name>LifelinesResearchPortal</name>
<version>1.0-SNAPSHOT</version>
<propertiesPath>apps/lifelinesresearchportal/org/molgenis/lifelinesresearchportal/lifelinesresearchportal.properties</propertiesPath>
<webSourceDir>WebContent</webSourceDir>
<endorsed.dir>${basedir}/endorsed</endorsed.dir>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<netbeans.hint.deploy.server>Tomcat</netbeans.hint.deploy.server>
</properties>
<modelVersion>4.0.0</modelVersion>
<groupId>org.molgenis</groupId>
<artifactId>${name}</artifactId>
<version>${version}</version>
<packaging>war</packaging>
<name>${name}</name>
<dependencies>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>3.1.1.RELEASE</version>
</dependency>
<dependency>
<groupId>xml-apis</groupId>
<artifactId>xml-apis</artifactId>
<version>1.4.01</version>
</dependency>
<dependency>
<groupId>org.apache.xmlgraphics</groupId>
<artifactId>batik-ext</artifactId>
<version>1.7</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.5</version>
<scope>provided</scope>
</dependency>
<!-- database hibernate, connectionpool, driver -->
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-search</artifactId>
<version>3.4.2.Final</version>
</dependency>
<dependency>
<groupId>org.molgenis</groupId>
<artifactId>molgenis</artifactId>
<version>1.0-SNAPSHOT</version>
</dependency>
<!-- database driver (include one per project!) -->
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.20</version>
</dependency>
<!-- Testing -->
<dependency>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
<version>6.4</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<scope>test</scope>
</dependency>
<!-- needs extra dependencies: objenesis & hamcrest -->
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<version>1.9.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.seleniumhq.selenium</groupId>
<artifactId>selenium-java</artifactId>
<version>2.19.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.seleniumhq.selenium</groupId>
<artifactId>selenium-firefox-driver</artifactId>
<version>2.19.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.seleniumhq.selenium</groupId>
<artifactId>selenium-server</artifactId>
<version>2.19.0</version>
<scope>test</scope>
</dependency>
<!-- Open ID -->
<dependency>
<groupId>org.expressme</groupId>
<artifactId>JOpenId</artifactId>
<version>1.08</version>
</dependency>
<!-- CAPTCHA -->
<dependency>
<groupId>org.gatein.captcha</groupId>
<artifactId>simplecaptcha</artifactId>
<version>1.1.1-GA-Patch01</version>
</dependency>
<!-- RSS Feeds -->
<!-- <dependency> <groupId>org.apache.abdera</groupId> <artifactId>abdera-bundle</artifactId>
<version>1.1.2</version> </dependency> -->
<!-- Commons Apache -->
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>commons-dbutils</groupId>
<artifactId>commons-dbutils</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.1</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2.1</version>
</dependency>
<!-- Query DSL -->
<dependency>
<groupId>com.mysema.querydsl</groupId>
<artifactId>querydsl-sql</artifactId>
<version>2.6.0</version>
</dependency>
<!-- Apache POI (excel, powerpoint, etc) -->
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi</artifactId>
<version>3.8</version>
</dependency>
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi-ooxml</artifactId>
<version>3.8</version>
</dependency>
<!-- Logging -->
<!-- <dependency> <groupId>org.slf4j</groupId> <artifactId>slf4j-api</artifactId>
<version>1.6.4</version> </dependency> <dependency> <groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId> <version>1.6.4</version> </dependency> -->
<!-- <dependency> <groupId>displaytag</groupId> <artifactId>displaytag</artifactId>
<version>1.2</version> <exclusions> <exclusion> <groupId>org.slf4j</groupId>
<artifactId>jcl104-over-slf4j</artifactId> </exclusion> </exclusions> </dependency>
<dependency> <groupId>displaytag</groupId> <artifactId>displaytag-export-poi</artifactId>
<version>1.2</version> </dependency> -->
<!-- Logging for displaytag -->
<!-- <dependency> <groupId>org.slf4j</groupId> <artifactId>slf4j-api</artifactId>
<version>1.6.1</version> </dependency> <dependency> <groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId> <version>1.6.1</version> </dependency> -->
<!-- <dependency> <groupId>org.slf4j</groupId> <artifactId>jcl104-over-slf4j</artifactId>
<version>1.6.1</version> </dependency> -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>1.6.6</version>
</dependency>
<dependency>
<groupId>com.oracle</groupId>
<artifactId>ojdbc6</artifactId>
<version>11.2.0</version>
</dependency>
</dependencies>
<build>
<testSourceDirectory>generated/java</testSourceDirectory>
<resources>
<!-- Persistence.xml -->
<resource>
<directory>generated/java/META-INF</directory>
<targetPath>META-INF</targetPath>
</resource>
<!-- copy freemarker templates -->
<resource>
<directory>apps/lifelinesresearchportal/</directory>
<includes>
<include>**/*.ftl</include>
</includes>
</resource>
<!-- <resource> <directory>modules/auth</directory> <includes> <include>**/*.ftl</include>
</includes> </resource> -->
<resource>
<directory>modules/datatable</directory>
<includes>
<include>**/*.ftl</include>
<!-- <include>**/*.xml</include> -->
</includes>
</resource>
</resources>
<plugins>
<plugin> <!-- makes it possible to build project with multiple src dirs -->
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>generated/java</source>
<source>apps/lifelinesresearchportal</source>
<source>modules/auth</source>
<source>modules/datatable</source>
<source>modules/file</source>
<source>modules/decorators/auth</source>
<source>modules/decorators/core</source>
<source>modules/import</source>
<source>modules/settings</source>
<source>modules/pheno</source>
<source>modules/search</source>
<source>modules/feedback</source>
<source>publicdata</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.molgenis</groupId>
<artifactId>molgenis-maven-plugin</artifactId>
<version>1.0</version>
<!-- <executions> <execution> <phase>generate-sources</phase> <goals>
<goal>generate</goal> </goals> </execution> </executions> -->
<configuration>
<propertiesPath>${propertiesPath}</propertiesPath>
</configuration>
</plugin>
<plugin>
<groupId>org.zeroturnaround</groupId>
<artifactId>jrebel-maven-plugin</artifactId>
<version>1.1.1</version>
<executions>
<execution>
<id>generate-rebel-xml</id>
<phase>process-resources</phase>
<goals>
<goal>generate</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.3.2</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
<debug>true</debug>
<compilerArguments>
<endorseddirs>${endorsed.dir}</endorseddirs>
</compilerArguments>
<excludes>
<exclude>**/test/**</exclude>
</excludes>
<testIncludes>
<testInclude>**/test/**</testInclude>
</testIncludes>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.1.1</version>
<configuration>
<warSourceDirectory>${webSourceDir}</warSourceDirectory>
<archive>
<manifest>
<addClasspath>true</addClasspath>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>2.1</version>
<executions>
<execution>
<id>copy-dependencies</id>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>${basedir}/target/lib</outputDirectory>
</configuration>
</execution>
<execution>
<phase>validate</phase>
<goals>
<goal>copy</goal>
</goals>
<configuration>
<outputDirectory>${endorsed.dir}</outputDirectory>
<silent>true</silent>
<artifactItems>
<artifactItem>
<groupId>javax</groupId>
<artifactId>javaee-endorsed-api</artifactId>
<version>6.0</version>
<type>jar</type>
</artifactItem>
</artifactItems>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.mortbay.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
<configuration>
<webAppSourceDirectory>${basedir}/${webSourceDir}</webAppSourceDirectory>
<scanIntervalSeconds>3</scanIntervalSeconds>
<stopPort>9966</stopPort>
<stopKey>jetty-stop</stopKey>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-eclipse-plugin</artifactId>
<configuration>
<wtpversion>2.0</wtpversion>
</configuration>
</plugin>
<plugin>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.6</version>
<configuration>
<suiteXmlFiles>
<suiteXmlFile>modules/datamodel/testngJpa1.xml</suiteXmlFile>
<suiteXmlFile>modules/datamodel/testngJpa2.xml</suiteXmlFile>
</suiteXmlFiles>
</configuration>
</plugin>
</plugins>
</build>
<reporting>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>2.4.1-SNAPSHOT</version>
<configuration>
<xmlOutput>true</xmlOutput>
<xmlOutputDirectory>target/site</xmlOutputDirectory>
<!-- <effort>Default</effort> <threshold>Normal</threshold> -->
</configuration>
</plugin>
</plugins>
</reporting>
<repositories>
<repository>
<id>sonatype</id>
<name>Sonatype Repository</name>
<url>http://oss.sonatype.org/content/groups/public</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
<repository>
<id>jboss</id>
<name>JBoss Repository</name>
<url>http://repository.jboss.org/nexus/content/groups/public-jboss/</url>
</repository>
</repositories>
</project>