pythonapp.yml

name: Python application

on: [push]

jobs:
  build:

    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v1
    - name: Set up Python 3.8
      uses: actions/setup-python@v1
      with:
        python-version: 3.8
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install numpy
        pip install -r requirements.txt
    - name: Install openslide
      run: |
         sudo apt-get install libopenslide0 libopenslide-dev
    - name: Lint with flake8
      run: |
        pip install flake8
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Set up EXACT for unit tests
      shell: 'script -q -e -c "bash {0}"'
      run: |
        git clone https://github.com/ChristianMarzahl/Exact.git
        cd Exact
        export DJANGO_SUPERUSER_USERNAME=testuser
        export DJANGO_SUPERUSER_PASSWORD=testpw
        cp env.dev env.prod
        cp env.dev.db env.prod.db
        cp exact/exact/settings.py.example exact/exact/settings.py
        docker-compose -f docker-compose.prod.yml up -d --build
        docker-compose -f docker-compose.prod.yml exec web python3 manage.py migrate --noinput 
        docker-compose -f docker-compose.prod.yml exec web python3 manage.py createsuperuser --noinput
        docker-compose -f docker-compose.prod.yml exec web python3 manage.py collectstatic --no-input --clear
    - name: Test with pytest
      run: |
        pip install pytest
        cd tests
        pytest