From a8fadc3cc67245466b7f8086ba890f80e9a707b8 Mon Sep 17 00:00:00 2001
From: Wojciech Lason <40389067+wlason@users.noreply.github.com>
Date: Wed, 6 Nov 2024 17:21:17 +0000
Subject: [PATCH] Update ingest pipeline.yml QC defaults

---
 panpipes/panpipes/pipeline_ingest/pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/panpipes/panpipes/pipeline_ingest/pipeline.yml b/panpipes/panpipes/pipeline_ingest/pipeline.yml
index c5ee70b5..0bf550f7 100644
--- a/panpipes/panpipes/pipeline_ingest/pipeline.yml
+++ b/panpipes/panpipes/pipeline_ingest/pipeline.yml
@@ -86,7 +86,7 @@ custom_genes_file: resources/qc_genelist_1.0.csv
 
 # (for pipeline_ingest.py)
 calc_proportions: hb,mt,rp
-score_genes: 
+score_genes: MarkersNeutro
 
 # cell cycle action
 ccgenes: default