From 4fddd09c6b612ea29ee7fa00b9c454dc13814692 Mon Sep 17 00:00:00 2001
From: Pierre Salvy <pierre.salvy@epfl.ch>
Date: Mon, 25 Sep 2017 13:47:06 +0200
Subject: [PATCH] FIX: fixed the package installation throught pypi

---
 MANIFEST.in |  5 ++++-
 doc/conf.py |  2 +-
 setup.cfg   |  6 +++++-
 setup.py    | 30 +++++++++++++++++++++++++++---
 4 files changed, 37 insertions(+), 6 deletions(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index 48fde0c..e9e3024 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1,2 +1,5 @@
 include LICENSE.txt
-include README.rst
\ No newline at end of file
+include README.rst
+
+include models/*
+include data/*
\ No newline at end of file
diff --git a/doc/conf.py b/doc/conf.py
index 500258c..28831b5 100644
--- a/doc/conf.py
+++ b/doc/conf.py
@@ -60,7 +60,7 @@
 # The short X.Y version.
 version = '0.6'
 # The full version, including alpha/beta/rc tags.
-release = '0.6.1-b3'
+release = '0.6.1-b5'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
diff --git a/setup.cfg b/setup.cfg
index 224a779..bd375db 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,2 +1,6 @@
 [metadata]
-description-file = README.md
\ No newline at end of file
+description-file = README.rst
+license_file = LICENSE.txt
+
+[bdist_wheel]
+universal = 1
\ No newline at end of file
diff --git a/setup.py b/setup.py
index d222d33..cf8562f 100644
--- a/setup.py
+++ b/setup.py
@@ -5,7 +5,7 @@
 
 """
 
-from setuptools import setup
+from setuptools import setup, find_packages
 # import os
 # from pip.req import parse_requirements
 # from pip.download import PipSession
@@ -19,7 +19,7 @@
 #     reqs = [str(ir.req) for ir in install_reqs]
 #     return reqs
 
-version_tag = '0.6.1-b3'
+version_tag = '0.6.1-b5'
 
 setup(name='pytfa',
       version=version_tag,
@@ -32,8 +32,32 @@
                         'optlang',
                         'pytest',
                         'scipy'],
-      py_modules=['pytfa'],
+      packages = find_packages(),
       python_requires='>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4',
       description='pyTFA adds Thermodynamics-based Flux Analysis',
       keywords=['pytfa','tfa','thermodynamics','flux analysis'],
+
+      license='Apache2',
+
+      # See https://PyPI.python.org/PyPI?%3Aaction=list_classifiers
+      classifiers=[
+            # How mature is this project? Common values are
+            #   3 - Alpha
+            #   4 - Beta
+            #   5 - Production/Stable
+            'Development Status :: 4 - Beta',
+
+            # Indicate who your project is intended for
+            'Intended Audience :: Science/Research',
+            'Topic :: Scientific/Engineering :: Bio-Informatics',
+            'Environment :: Console',
+
+            # Pick your license as you wish (should match "license" above)
+            'License :: OSI Approved :: Apache Software License',
+
+            # Specify the Python versions you support here. In particular, ensure
+            # that you indicate whether you support Python 2, Python 3 or both.
+            'Programming Language :: Python :: 3.5',
+            'Programming Language :: Python :: 3.6',
+      ],
      )