run.yml

name: "weekly_run"
on:
  workflow_dispatch:
  schedule:
    - cron: "15 11 * * 3"

jobs:
  weekly_run_fit:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
    - uses: actions/checkout@v3

    - uses: r-lib/actions/setup-r@v2
      with:
        r-version: '4.2.3'

    - name: Install system dependencies
      run: |
        sudo apt-get update
        sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev
    - uses: r-lib/actions/setup-renv@v2-branch

    - name: Create output objects
      run: Rscript 'R/workflow/workflow_fit.R'

    - name: Commit files
      run: |
        git config user.email "action@github.com"
        git config user.name "GitHub Action - Output without sims"
        git add --all
        git commit -m "Build output files"
        git pull --rebase origin main
        git push
        echo "pushed to github"
        
    - name: Create issue about failure
      if: failure() && github.event_name != 'workflow_dispatch'
      run: |
        gh issue reopen 1234

  weekly_run_sim:
    needs: weekly_run_fit
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
    - uses: actions/checkout@v3

    - uses: r-lib/actions/setup-r@v2
      with:
        r-version: '4.2.3'

    - name: Install system dependencies
      run: |
        sudo apt-get update
        sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev
    - uses: r-lib/actions/setup-renv@v2-branch
    
    - name: Pull changes
      run: |
        git pull --rebase origin main

    - name: Create output objects
      run: Rscript 'R/workflow/workflow_sim.R'

    - name: Commit files
      run: |
        git config user.email "action@github.com"
        git config user.name "GitHub Action - Final Output"
        git add --all
        git commit -m "Build output files"
        git pull --rebase origin main
        git push
        echo "pushed to github"
        
    - name: Create issue about failure
      if: failure() && github.event_name != 'workflow_dispatch'
      run: |
        gh issue reopen 1234