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SIRF-Recon and Registration

  • RTA_EPI: Reconstruct-Transform-Average EPI-based

  • RTA_NAC: Reconstruct-Transform-Average NAC-based

  • Reg_Nifty: Registration with NiftyReg -> outputs TM and absolute displacement values

  • crerate_epi_nii.sh: convert .dcm files to .nii (needs ODIN)

  • motion_simu.py includes the possibility to perform a motion

  • reg_spm_NAC.py uses SPM for registration of NACs

  • reg_spm_NAC_EPI.py registration of NACs in EPI space

  • reg_spm_NAC_UTE.py registration of NACs in UTE space

  • reg_spm_epi.py uses SPM for registration of EPIs

  • sirf_recon_resample.py includes NiftyReg: resampling based on external transformation matrices

  • sirf_recon_spm_rta.py includes SPM for registration, RTA: Reconstruct-Transform-Add