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Using pKa-ANI to compute titration states at a given pH? #389

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sastrys1 opened this issue Feb 20, 2024 · 2 comments
Open

Using pKa-ANI to compute titration states at a given pH? #389

sastrys1 opened this issue Feb 20, 2024 · 2 comments

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@sastrys1
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In a recent paper by Gokcan and Isayev, they developed a new model using representation learning built on ANI (a learned way to quickly compute the environment around a given atom) and was able to outperform propka.

I was wondering if you would be interested in me adding pka-ANI as a command line option to assign titration states? This would be useful for me personally so I will probably do it anyway but I wanted to know if it would be useful to the community.

Screen Shot 2024-02-20 at 11 12 01 AM

@sastrys1
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For clarity, pka-ANI operates on a PDB file with atom coordinates just like propka does so it seems like plugging in pka-ANI to the existing propka code and adding that as a command line option is not super hard. pka-ANI probably would take more time though.

@sobolevnrm
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Yes, this sounds very useful. Please submit a PR!

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