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pyproject.toml
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[tool.poetry]
name = "mixs"
version = "6.2.0"
description = "MIxS: the Minimum Information about any (X) Sequence standard"
authors = [
"Mark Andrew Miller <[email protected]>",
"Sujay Patil <[email protected]>"
]
license = "CC0-1.0 license"
readme = "README.md"
include = ["README.md", "src/mixs/schema", "project"]
[tool.poetry.dependencies]
python = "^3.9"
linkml-runtime = "^1.6.0"
rdflib = "^6.2.0" # some LinkML components are not compatible with rdflib 7+ yet
#pydantic = "^1.10.13"
#[tool.poetry-dynamic-versioning]
#enable = true
#vcs = "git"
#style = "pep440"
pandas = "^2.2.0"
scipy = "^1.12.0"
matplotlib = "^3.8.2"
pyarrow = "^15.0.0"
[tool.poetry.group.dev.dependencies]
linkml = "^1.6.0"
mkdocs-material = "^9.0.12"
mkdocs-mermaid2-plugin = "^0.6.0"
schemasheets = "^0.1.18"
black = "^24.3.0"
yamllint = "^1.35.1"
[build-system]
requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"]
build-backend = "poetry_dynamic_versioning.backend"
[tool.poetry.extras]
docs = ["linkml", "mkdocs-material"]
[tool.poetry.scripts]
extension-distances = 'scripts.extension_distances:generate_dendrogram'
extension-differences = 'scripts.extension_slot_diffrences:set_arithmatic'
linkml2class-tsvs = 'scripts.linkml2class_tsvs:process_schema_classes'