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Allow to split fastq or get list of readID per cell #184

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lldelisle opened this issue Nov 14, 2023 · 2 comments
Open

Allow to split fastq or get list of readID per cell #184

lldelisle opened this issue Nov 14, 2023 · 2 comments

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@lldelisle
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Hi,
This may look like a very strange query. I am trying to make a small dataset and I would be interested in generating a small fastq with only reads mapping to some cells. I was wondering if you've already written a piece of code that would store readID instead of the count.
Thanks.

@lldelisle
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I will write the code as I need it. Would you like a PR?

@Hoohm
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Hoohm commented Nov 16, 2023

Hello,

I have not written code that would accommodate this atm.
If you want to have a stab at it, I would recommend trying out the new branch using polars as a backend as it will make this way easier
Here is the PR: #170

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