diff --git a/src/igvfd/mappings/alignment_file.json b/src/igvfd/mappings/alignment_file.json index 196971fa3..d818a50bb 100644 --- a/src/igvfd/mappings/alignment_file.json +++ b/src/igvfd/mappings/alignment_file.json @@ -1,6 +1,6 @@ { - "hash": "7f221dd2ce0c8f90adfd95ba7b025cab", - "index_name": "alignment_file_7f221dd2", + "hash": "d784165b95ad0795451e7e1a79b87936", + "index_name": "alignment_file_d784165b", "item_type": "alignment_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/configuration_file.json b/src/igvfd/mappings/configuration_file.json index c4b95ef74..ddb25cf38 100644 --- a/src/igvfd/mappings/configuration_file.json +++ b/src/igvfd/mappings/configuration_file.json @@ -1,6 +1,6 @@ { - "hash": "e775f0a39a668474b289dea153cbc696", - "index_name": "configuration_file_e775f0a3", + "hash": "447e775054e9a4836cb65a480a38faff", + "index_name": "configuration_file_447e7750", "item_type": "configuration_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/construct_library_set.json b/src/igvfd/mappings/construct_library_set.json index dd646eed5..da34bd1f6 100644 --- a/src/igvfd/mappings/construct_library_set.json +++ b/src/igvfd/mappings/construct_library_set.json @@ -1,6 +1,6 @@ { - "hash": "0d63cb7fe2f3b9b9fa42e83cded17bf3", - "index_name": "construct_library_set_0d63cb7f", + "hash": "7ea29280f399421a03d3a697a2b5365c", + "index_name": "construct_library_set_7ea29280", "item_type": "construct_library_set", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/genome_browser_annotation_file.json b/src/igvfd/mappings/genome_browser_annotation_file.json index 911788c6e..0c7070484 100644 --- a/src/igvfd/mappings/genome_browser_annotation_file.json +++ b/src/igvfd/mappings/genome_browser_annotation_file.json @@ -1,6 +1,6 @@ { - "hash": "e1e9c75f86974ee26d25c4e1f2ca89b3", - "index_name": "genome_browser_annotation_file_e1e9c75f", + "hash": "cec0bd8c3eb8479c820a3403ae775be6", + "index_name": "genome_browser_annotation_file_cec0bd8c", "item_type": "genome_browser_annotation_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/image_file.json b/src/igvfd/mappings/image_file.json index 90b85d4ea..e401dca8b 100644 --- a/src/igvfd/mappings/image_file.json +++ b/src/igvfd/mappings/image_file.json @@ -1,6 +1,6 @@ { - "hash": "454fc29f895f6bc3a44697623523ab66", - "index_name": "image_file_454fc29f", + "hash": "9d1370578fffd6d46ed2a425a3c2a68c", + "index_name": "image_file_9d137057", "item_type": "image_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/in_vitro_system.json b/src/igvfd/mappings/in_vitro_system.json index 8ecaee274..b0a4f6079 100644 --- a/src/igvfd/mappings/in_vitro_system.json +++ b/src/igvfd/mappings/in_vitro_system.json @@ -1,6 +1,6 @@ { - "hash": "4ef5c47cb3458d19fd2e93167818d378", - "index_name": "in_vitro_system_4ef5c47c", + "hash": "e83ca2076ffa9e9432c9640869224c99", + "index_name": "in_vitro_system_e83ca207", "item_type": "in_vitro_system", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/index_file.json b/src/igvfd/mappings/index_file.json index e0591c0f6..5835afc6e 100644 --- a/src/igvfd/mappings/index_file.json +++ b/src/igvfd/mappings/index_file.json @@ -1,6 +1,6 @@ { - "hash": "a147612e9013f900a3c1ac70cddd841e", - "index_name": "index_file_a147612e", + "hash": "be39bd35a8f339ff91c2abcb2408d874", + "index_name": "index_file_be39bd35", "item_type": "index_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/matrix_file.json b/src/igvfd/mappings/matrix_file.json index 02de980e0..7b165582b 100644 --- a/src/igvfd/mappings/matrix_file.json +++ b/src/igvfd/mappings/matrix_file.json @@ -1,6 +1,6 @@ { - "hash": "648d2fcde23db421f14ecbba94fe7153", - "index_name": "matrix_file_648d2fcd", + "hash": "8bfe66504f1c9d6cae853c37f5d7025a", + "index_name": "matrix_file_8bfe6650", "item_type": "matrix_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/measurement_set.json b/src/igvfd/mappings/measurement_set.json index a69bab401..ee8a75e34 100644 --- a/src/igvfd/mappings/measurement_set.json +++ b/src/igvfd/mappings/measurement_set.json @@ -1,6 +1,6 @@ { - "hash": "558f566d153d4d2e10fa9f67b0a335ad", - "index_name": "measurement_set_558f566d", + "hash": "fa707dbbe1e54b85c215b8b1f8f0097d", + "index_name": "measurement_set_fa707dbb", "item_type": "measurement_set", "mapping": { "dynamic_templates": [ @@ -886,6 +886,9 @@ "aliases": { "type": "keyword" }, + "collections": { + "type": "keyword" + }, "creation_timestamp": { "type": "date" }, @@ -935,6 +938,9 @@ "status": { "type": "keyword" }, + "study_sets": { + "type": "keyword" + }, "submitted_by": { "type": "keyword" }, @@ -2774,465 +2780,7 @@ "type": "keyword" }, "construct_library_sets": { - "properties": { - "@id": { - "type": "keyword" - }, - "@type": { - "type": "keyword" - }, - "accession": { - "type": "keyword" - }, - "aliases": { - "type": "keyword" - }, - "alternate_accessions": { - "type": "keyword" - }, - "applied_to_samples": { - "type": "keyword" - }, - "associated_phenotypes": { - "type": "keyword" - }, - "average_guide_coverage": { - "store": true, - "type": "float" - }, - "average_insert_size": { - "store": true, - "type": "float" - }, - "award": { - "type": "keyword" - }, - "collections": { - "type": "keyword" - }, - "control_file_sets": { - "type": "keyword" - }, - "control_for": { - "type": "keyword" - }, - "control_type": { - "type": "keyword" - }, - "creation_timestamp": { - "type": "date" - }, - "description": { - "type": "text" - }, - "documents": { - "type": "keyword" - }, - "exon": { - "type": "keyword" - }, - "file_set_type": { - "type": "keyword" - }, - "files": { - "type": "keyword" - }, - "guide_type": { - "type": "keyword" - }, - "input_for": { - "type": "keyword" - }, - "integrated_content_files": { - "properties": { - "@id": { - "type": "keyword" - }, - "@type": { - "type": "keyword" - }, - "accession": { - "type": "keyword" - }, - "aliases": { - "type": "keyword" - }, - "alternate_accessions": { - "type": "keyword" - }, - "analysis_step_version": { - "type": "keyword" - }, - "anvil_url": { - "type": "keyword" - }, - "assay_titles": { - "type": "keyword" - }, - "assembly": { - "type": "keyword" - }, - "award": { - "type": "keyword" - }, - "barcode_map_for": { - "type": "keyword" - }, - "cell_type_annotation": { - "type": "keyword" - }, - "checkfiles_version": { - "type": "keyword" - }, - "collections": { - "type": "keyword" - }, - "content_md5sum": { - "type": "keyword" - }, - "content_type": { - "type": "keyword" - }, - "controlled_access": { - "store": true, - "type": "boolean" - }, - "creation_timestamp": { - "type": "date" - }, - "dbxrefs": { - "type": "keyword" - }, - "derived_from": { - "type": "keyword" - }, - "derived_manually": { - "store": true, - "type": "boolean" - }, - "description": { - "type": "text" - }, - "documents": { - "type": "keyword" - }, - "external": { - "store": true, - "type": "boolean" - }, - "file_format": { - "type": "keyword" - }, - "file_format_specifications": { - "type": "keyword" - }, - "file_format_type": { - "type": "keyword" - }, - "file_set": { - "type": "keyword" - }, - "file_size": { - "store": true, - "type": "long" - }, - "gene_list_for": { - "type": "keyword" - }, - "href": { - "type": "keyword" - }, - "input_file_for": { - "type": "keyword" - }, - "integrated_in": { - "type": "keyword" - }, - "lab": { - "type": "keyword" - }, - "loci_list_for": { - "type": "keyword" - }, - "md5sum": { - "type": "keyword" - }, - "notes": { - "type": "text" - }, - "release_timestamp": { - "type": "date" - }, - "revoke_detail": { - "type": "keyword" - }, - "s3_uri": { - "type": "keyword" - }, - "schema_version": { - "type": "keyword" - }, - "source_url": { - "type": "keyword" - }, - "sources": { - "type": "keyword" - }, - "status": { - "type": "keyword" - }, - "submitted_by": { - "type": "keyword" - }, - "submitted_file_name": { - "type": "keyword" - }, - "submitter_comment": { - "type": "keyword" - }, - "summary": { - "type": "keyword" - }, - "transcriptome_annotation": { - "type": "keyword" - }, - "upload_credentials": { - "properties": {}, - "type": "object" - }, - "upload_status": { - "type": "keyword" - }, - "uuid": { - "type": "keyword" - }, - "validation_error_detail": { - "type": "keyword" - }, - "workflow": { - "type": "keyword" - } - }, - "type": "object" - }, - "lab": { - "type": "keyword" - }, - "large_scale_gene_list": { - "type": "keyword" - }, - "large_scale_loci_list": { - "type": "keyword" - }, - "lot_id": { - "type": "keyword" - }, - "lower_bound_guide_coverage": { - "store": true, - "type": "long" - }, - "lower_bound_insert_size": { - "store": true, - "type": "long" - }, - "notes": { - "type": "text" - }, - "orf_list": { - "type": "keyword" - }, - "product_id": { - "type": "keyword" - }, - "publications": { - "type": "keyword" - }, - "release_timestamp": { - "type": "date" - }, - "revoke_detail": { - "type": "keyword" - }, - "schema_version": { - "type": "keyword" - }, - "scope": { - "type": "keyword" - }, - "selection_criteria": { - "type": "keyword" - }, - "small_scale_gene_list": { - "properties": { - "@id": { - "type": "keyword" - }, - "@type": { - "type": "keyword" - }, - "aliases": { - "type": "keyword" - }, - "collections": { - "type": "keyword" - }, - "creation_timestamp": { - "type": "date" - }, - "dbxrefs": { - "type": "keyword" - }, - "description": { - "type": "text" - }, - "geneid": { - "type": "keyword" - }, - "geneid_with_version": { - "type": "keyword" - }, - "locations": { - "properties": { - "assembly": { - "type": "keyword" - }, - "chromosome": { - "type": "keyword" - }, - "end": { - "store": true, - "type": "long" - }, - "start": { - "store": true, - "type": "long" - } - }, - "type": "object" - }, - "name": { - "type": "keyword" - }, - "notes": { - "type": "text" - }, - "release_timestamp": { - "type": "date" - }, - "schema_version": { - "type": "keyword" - }, - "status": { - "type": "keyword" - }, - "study_sets": { - "type": "keyword" - }, - "submitted_by": { - "type": "keyword" - }, - "submitter_comment": { - "type": "keyword" - }, - "summary": { - "type": "keyword" - }, - "symbol": { - "type": "keyword" - }, - "synonyms": { - "type": "keyword" - }, - "taxa": { - "type": "keyword" - }, - "title": { - "type": "keyword" - }, - "transcriptome_annotation": { - "type": "keyword" - }, - "uuid": { - "type": "keyword" - }, - "version_number": { - "type": "keyword" - } - }, - "type": "object" - }, - "small_scale_loci_list": { - "properties": { - "assembly": { - "type": "keyword" - }, - "chromosome": { - "type": "keyword" - }, - "end": { - "store": true, - "type": "long" - }, - "start": { - "store": true, - "type": "long" - } - }, - "type": "object" - }, - "sources": { - "type": "keyword" - }, - "status": { - "type": "keyword" - }, - "submitted_by": { - "type": "keyword" - }, - "submitted_files_timestamp": { - "type": "date" - }, - "submitter_comment": { - "type": "keyword" - }, - "summary": { - "type": "keyword" - }, - "targeton": { - "type": "keyword" - }, - "tile": { - "properties": { - "tile_end": { - "store": true, - "type": "long" - }, - "tile_id": { - "type": "keyword" - }, - "tile_start": { - "store": true, - "type": "long" - } - }, - "type": "object" - }, - "tiling_modality": { - "type": "keyword" - }, - "upper_bound_guide_coverage": { - "store": true, - "type": "long" - }, - "upper_bound_insert_size": { - "store": true, - "type": "long" - }, - "uuid": { - "type": "keyword" - } - }, - "type": "object" + "type": "keyword" }, "creation_timestamp": { "type": "date" diff --git a/src/igvfd/mappings/model_file.json b/src/igvfd/mappings/model_file.json index daf744813..67b0064af 100644 --- a/src/igvfd/mappings/model_file.json +++ b/src/igvfd/mappings/model_file.json @@ -1,6 +1,6 @@ { - "hash": "bd275db53554d41c2fbe86b6f41d79ed", - "index_name": "model_file_bd275db5", + "hash": "08f42f395093e6bc091292bcdb90d6b4", + "index_name": "model_file_08f42f39", "item_type": "model_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/model_set.json b/src/igvfd/mappings/model_set.json index b98bec297..adba2f987 100644 --- a/src/igvfd/mappings/model_set.json +++ b/src/igvfd/mappings/model_set.json @@ -1,6 +1,6 @@ { - "hash": "21263baed14c4358d833513a91cd6973", - "index_name": "model_set_21263bae", + "hash": "9a92d8cddad37092d6e50a912a17db19", + "index_name": "model_set_9a92d8cd", "item_type": "model_set", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/multiplexed_sample.json b/src/igvfd/mappings/multiplexed_sample.json index 9451120b7..ba8c8965d 100644 --- a/src/igvfd/mappings/multiplexed_sample.json +++ b/src/igvfd/mappings/multiplexed_sample.json @@ -1,6 +1,6 @@ { - "hash": "480940534e17f9938f0deddbaa64520d", - "index_name": "multiplexed_sample_48094053", + "hash": "db8a7d5c3dd73e7a140868b184d3cd20", + "index_name": "multiplexed_sample_db8a7d5c", "item_type": "multiplexed_sample", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/prediction_set.json b/src/igvfd/mappings/prediction_set.json index fc61afd6d..94f3e3341 100644 --- a/src/igvfd/mappings/prediction_set.json +++ b/src/igvfd/mappings/prediction_set.json @@ -1,6 +1,6 @@ { - "hash": "b2fbca9c0ef0c7ecec59276b9b615655", - "index_name": "prediction_set_b2fbca9c", + "hash": "250c4be07b883a0101bfb246c22e8a7b", + "index_name": "prediction_set_250c4be0", "item_type": "prediction_set", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/primary_cell.json b/src/igvfd/mappings/primary_cell.json index da746df6a..82f7a30d3 100644 --- a/src/igvfd/mappings/primary_cell.json +++ b/src/igvfd/mappings/primary_cell.json @@ -1,6 +1,6 @@ { - "hash": "accbe8dfc8e6100f82ab9ae085a94b86", - "index_name": "primary_cell_accbe8df", + "hash": "f7ca71e371bd5ca0f35a58c28eb1e3c9", + "index_name": "primary_cell_f7ca71e3", "item_type": "primary_cell", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/reference_file.json b/src/igvfd/mappings/reference_file.json index fd21ae96d..af282d70c 100644 --- a/src/igvfd/mappings/reference_file.json +++ b/src/igvfd/mappings/reference_file.json @@ -1,6 +1,6 @@ { - "hash": "025fe7d97455288b51806d3ceb26049a", - "index_name": "reference_file_025fe7d9", + "hash": "ab4b8a53d9ea8b0fc335295c8544ee0d", + "index_name": "reference_file_ab4b8a53", "item_type": "reference_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/sequence_file.json b/src/igvfd/mappings/sequence_file.json index b9fa4222a..7e720ed0f 100644 --- a/src/igvfd/mappings/sequence_file.json +++ b/src/igvfd/mappings/sequence_file.json @@ -1,6 +1,6 @@ { - "hash": "eaa9f509cea03432d377ff7abefaef8b", - "index_name": "sequence_file_eaa9f509", + "hash": "a48edad850025cae67120cd5c5c1cc08", + "index_name": "sequence_file_a48edad8", "item_type": "sequence_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/signal_file.json b/src/igvfd/mappings/signal_file.json index 5ab30a7d6..d72db1679 100644 --- a/src/igvfd/mappings/signal_file.json +++ b/src/igvfd/mappings/signal_file.json @@ -1,6 +1,6 @@ { - "hash": "a0f988658275faf2705043bc171cf4bb", - "index_name": "signal_file_a0f98865", + "hash": "a7165aae756bdf0e05158d053005ae27", + "index_name": "signal_file_a7165aae", "item_type": "signal_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/tabular_file.json b/src/igvfd/mappings/tabular_file.json index 04760c9ab..862a144eb 100644 --- a/src/igvfd/mappings/tabular_file.json +++ b/src/igvfd/mappings/tabular_file.json @@ -1,6 +1,6 @@ { - "hash": "764a0fee11f02a6a14b56c9ad3c418a8", - "index_name": "tabular_file_764a0fee", + "hash": "cb0435e3e47c1fccaf0fa6260378439f", + "index_name": "tabular_file_cb0435e3", "item_type": "tabular_file", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/tissue.json b/src/igvfd/mappings/tissue.json index 1a2d4a6c4..67f1be106 100644 --- a/src/igvfd/mappings/tissue.json +++ b/src/igvfd/mappings/tissue.json @@ -1,6 +1,6 @@ { - "hash": "160aebcdeeb13eb8cee47c1afd39416c", - "index_name": "tissue_160aebcd", + "hash": "672f74578dc8f89e34ea223f95006c4a", + "index_name": "tissue_672f7457", "item_type": "tissue", "mapping": { "dynamic_templates": [ diff --git a/src/igvfd/mappings/whole_organism.json b/src/igvfd/mappings/whole_organism.json index d25bd0455..fe9044230 100644 --- a/src/igvfd/mappings/whole_organism.json +++ b/src/igvfd/mappings/whole_organism.json @@ -1,6 +1,6 @@ { - "hash": "dccfbfb977a5c61686f23415d5b8431b", - "index_name": "whole_organism_dccfbfb9", + "hash": "e8f2f0c4bd5ebf7b90739d0f8baa5deb", + "index_name": "whole_organism_e8f2f0c4", "item_type": "whole_organism", "mapping": { "dynamic_templates": [