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download and parsing fail for fairly normal data pkgs #91

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atn38 opened this issue Jan 17, 2020 · 0 comments
Open
1 of 3 tasks

download and parsing fail for fairly normal data pkgs #91

atn38 opened this issue Jan 17, 2020 · 0 comments

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@atn38
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atn38 commented Jan 17, 2020

Describe the bug

From console

Downloading data https://pasta.lternet.edu/package/data/eml/knb-lter-nwt/215/1/de645d9b99392839ba38e0eb404ed13a ...
Error in curl::curl_fetch_disk(url, x$path, handle = handle) : 
  Failed to open file C:\Users\atn893\AppData\Local\Temp\RtmpAZI3Uh/data_package/https_3A_2F_2Fpasta.lternet.edu_2Fpackage_2Fdata_2Feml_2Fknb-lter-nwt_2F215_2F1_2Fde645d9b99392839ba38e0eb404ed13a__csv/https%3A%2F%2Fpasta.lternet.edu%2Fpackage%2Fdata%2Feml%2Fknb-lter-nwt%2F215%2F1%2Fde645d9b99392839ba38e0eb404ed13a.csv.
Sorry, datapie can't handle  doi:10.6073/pasta/038a8ab20a6ffa2044b885c6a999112e at this time.

To Reproduce
How did you load the function(s)?

  • via devtools::load_all()
  • via installing datapie and calling the function
  • some other way, please describe:

What DOI and data object did you encounter the bug with?
DOI: doi:10.6073/pasta/038a8ab20a6ffa2044b885c6a999112e
Data object:

Expected behavior
What did you expect to happen instead of the bug?

datapie downloads and parses this fairly standard data pkg successfully. I've tried a couple other DOIs, all for normal looking datasets, and get the same error.

Session Information
Call sessionInfo() in your R console and paste in the information here.

R version 3.6.0 (2019-04-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] shiny_1.3.2        datapie_0.0.0.9000 testthat_2.1.1    

loaded via a namespace (and not attached):
  [1] nlme_3.1-140       fs_1.3.1           usethis_1.5.0     
  [4] lubridate_1.7.4    devtools_2.0.2     progress_1.2.1    
  [7] RColorBrewer_1.1-2 httr_1.4.0         rprojroot_1.3-2   
 [10] inspectdf_0.0.4    tools_3.6.0        backports_1.1.4   
 [13] R6_2.4.0           lazyeval_0.2.2     colorspace_1.4-1  
 [16] withr_2.1.2        tidyselect_0.2.5   prettyunits_1.0.2 
 [19] processx_3.3.1     curl_3.3           compiler_3.6.0    
 [22] rvest_0.3.4        datapack_1.3.1     cli_1.1.0         
 [25] jsonld_2.1         xml2_1.2.0         shinyjs_1.0       
 [28] desc_1.2.0         plotly_4.9.0       labeling_0.3      
 [31] scales_1.0.0       readr_1.3.1        askpass_1.1       
 [34] callr_3.2.0        commonmark_1.7     stringr_1.4.0     
 [37] digest_0.6.19      rmarkdown_1.12     base64enc_0.1-3   
 [40] pkgconfig_2.0.2    htmltools_0.3.6    sessioninfo_1.1.1 
 [43] highr_0.8          readxl_1.3.1       htmlwidgets_1.3   
 [46] rlang_0.4.0        rstudioapi_0.10    generics_0.0.2    
 [49] emld_0.3.0         jsonlite_1.6       crosstalk_1.0.0   
 [52] dplyr_0.8.1        magrittr_1.5       Rcpp_1.0.1        
 [55] munsell_0.5.0      ggfittext_0.8.1    stringi_1.4.3     
 [58] yaml_2.2.0         jqr_1.1.0          pkgbuild_1.0.3    
 [61] plyr_1.8.4         grid_3.6.0         shinyFiles_0.7.3  
 [64] EML_2.0.0          promises_1.0.1     forcats_0.4.0     
 [67] crayon_1.3.4       lattice_0.20-38    haven_2.1.0       
 [70] cowplot_0.9.4      redland_1.0.17-10  hash_2.2.6.1      
 [73] hms_0.4.2          knitr_1.22         parsedate_1.2.0   
 [76] ps_1.3.0           pillar_1.4.0       uuid_0.1-2        
 [79] markdown_0.9       dataone_2.1.2      pkgload_1.0.2     
 [82] XML_3.98-1.19      glue_1.3.1         packrat_0.5.0     
 [85] evaluate_0.13      V8_2.2             modelr_0.1.4      
 [88] data.table_1.12.2  remotes_2.0.4      httpuv_1.5.1      
 [91] cellranger_1.1.0   openssl_1.3        gtable_0.3.0      
 [94] purrr_0.3.2        tidyr_0.8.3        assertthat_0.2.1  
 [97] ggplot2_3.1.1      xfun_0.7           mime_0.6          
[100] xtable_1.8-4       broom_0.5.2        tidyverse_1.2.1   
[103] roxygen2_6.1.1     later_0.8.0        rsconnect_0.8.13  
[106] viridisLite_0.3.0  tibble_2.1.1       memoise_1.1.0     
[109] metajam_0.2.0.9000
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