pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>BioSharingUtils</groupId>
    <artifactId>BioSharingUtils</artifactId>
    <version>1.0</version>

    <build>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>2.3.2</version>
                <configuration>
                    <source>1.5</source>
                    <target>1.5</target>
                    <executable>apt</executable>
                    <fork>true</fork>
                    <debug>true</debug>
                    <compilerArguments>
                        <s>${project.build.directory}</s>
                    </compilerArguments>
                    <meminitial>128m</meminitial>
                    <maxmem>512m</maxmem>
                </configuration>
            </plugin>

            <plugin>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>2.2-beta-5</version>
                <configuration>
                    <archive>
                        <manifest>
                            <mainClass>org.biosharing.cli.BioSharingUtils</mainClass>
                        </manifest>
                    </archive>
                    <archiverConfig>
                        <duplicateBehavior>skip</duplicateBehavior>
                    </archiverConfig>
                    <descriptorRefs>
                        <descriptorRef>jar-with-dependencies</descriptorRef>
                    </descriptorRefs>
                </configuration>
                <executions>
                    <execution>
                        <id>make-assembly</id>
                        <phase>package</phase>
                        <goals>
                            <goal>attached</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

        </plugins>

        <resources>
            <!-- defines the files to be filtered -->
            <resource>
                <directory>src/main/resources</directory>
                <filtering>true</filtering>
                <includes>
                    <include>**/*.properties</include>
                </includes>
            </resource>
        </resources>
    </build>

    <developers>
        <developer>
            <id>maguire</id>
            <name>Eamonn Maguire</name>
            <email>eamonnmag@gmail.com</email>
            <organization>ISA tools team</organization>
            <organizationUrl>http://isa-tools.org</organizationUrl>
        </developer>
    </developers>

    <repositories>
        <repository>
            <id>oerc</id>
            <url>http://frog.oerc.ox.ac.uk:8080/artifactory/repo/</url>
        </repository>
    </repositories>

    <dependencies>
        <dependency>
            <groupId>org.isatools</groupId>
            <artifactId>ISAcreator</artifactId>
            <version>1.7.0</version>
        </dependency>

        <dependency>
            <groupId>mysql</groupId>
            <artifactId>mysql-connector-java</artifactId>
            <version>5.1.14</version>
        </dependency>

    </dependencies>

    <profiles>
        <profile>
            <id>biosharing-local</id>
            <properties>
                <db.url>jdbc:mysql://localhost:33066/biosharing</db.url>
                <db.class>com.mysql.jdbc.Driver</db.class>
                <db.username>root</db.username>
                <db.password></db.password>
            </properties>
        </profile>
    </profiles>

</project>