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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(GetCellGeneDistance,Seurat)
S3method(GetCellGeneDistance,SingleCellExperiment)
S3method(GetCellGeneRanking,Seurat)
S3method(GetCellGeneRanking,SingleCellExperiment)
S3method(GetCellGeneSet,Seurat)
S3method(GetCellGeneSet,SingleCellExperiment)
S3method(GetGroupCoordinates,Seurat)
S3method(GetGroupCoordinates,SingleCellExperiment)
S3method(GetGroupCoordinates,matrix)
S3method(GetGroupGeneDistance,Seurat)
S3method(GetGroupGeneDistance,SingleCellExperiment)
S3method(GetGroupGeneRanking,Seurat)
S3method(GetGroupGeneRanking,SingleCellExperiment)
S3method(GetGroupGeneSet,Seurat)
S3method(GetGroupGeneSet,SingleCellExperiment)
S3method(RunCellGSEA,Seurat)
S3method(RunCellGSEA,SingleCellExperiment)
S3method(RunCellHGT,Seurat)
S3method(RunCellHGT,SingleCellExperiment)
S3method(RunGroupGSEA,Seurat)
S3method(RunGroupGSEA,SingleCellExperiment)
S3method(RunMCA,Seurat)
S3method(RunMCA,SingleCellExperiment)
S3method(RunMCA,matrix)
S3method(RunMCDMAP,Seurat)
S3method(RunMCDMAP,SingleCellExperiment)
S3method(RunMCTSNE,Seurat)
S3method(RunMCTSNE,SingleCellExperiment)
S3method(RunMCUMAP,Seurat)
S3method(RunMCUMAP,SingleCellExperiment)
export(DimPlotMC)
export(GetCellGeneRanking)
export(GetCellGeneSet)
export(GetGSEAMatrix)
export(GetGroupGeneRanking)
export(GetGroupGeneSet)
export(RunCellGSEA)
export(RunCellHGT)
export(RunGroupGSEA)
export(RunMCA)
export(RunMCDMAP)
export(RunMCTSNE)
export(RunMCUMAP)
export(fgseaCelliD)
export(plotReducedDimMC)
import(BiocParallel)
import(Matrix)
import(RcppArmadillo)
import(Seurat)
import(SingleCellExperiment)
import(data.table)
import(fastmatch)
import(fgsea)
import(ggplot2)
import(scater)
import(tictoc)
importClassesFrom(Seurat,Seurat)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(Rcpp,sourceCpp)
importFrom(Rtsne,Rtsne)
importFrom(Seurat,DimPlot)
importFrom(SummarizedExperiment,assay)
importFrom(fastmatch,fmatch)
importFrom(glue,glue)
importFrom(irlba,irlba)
importFrom(matrixStats,rowVars)
importFrom(pbapply,pblapply)
importFrom(reticulate,py_module_available)
importFrom(scater,plotReducedDim)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,runif)
importFrom(stringr,str_length)
importFrom(umap,umap)
importFrom(utils,menu)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
useDynLib(CelliD)