From f40f929e44253eb587bdcce5fecd29bb8e155269 Mon Sep 17 00:00:00 2001
From: Jordan Pierce <115024024+Jordan-Pierce@users.noreply.github.com>
Date: Mon, 16 Dec 2024 15:00:56 -0500
Subject: [PATCH 1/3] LabelWindow: editting labels is cleaner and more accurate

---
 coralnet_toolbox/Annotations/QtAnnotation.py | 24 +++++++++++++++++---
 coralnet_toolbox/QtLabelWindow.py            |  5 +++-
 2 files changed, 25 insertions(+), 4 deletions(-)

diff --git a/coralnet_toolbox/Annotations/QtAnnotation.py b/coralnet_toolbox/Annotations/QtAnnotation.py
index 824304fb..72de639c 100644
--- a/coralnet_toolbox/Annotations/QtAnnotation.py
+++ b/coralnet_toolbox/Annotations/QtAnnotation.py
@@ -118,12 +118,30 @@ def update_user_confidence(self, new_label: 'Label'):
         self.show_message = False
 
     def update_label(self, new_label: 'Label'):
+        # Initializing
         if self.label is None:
             self.label = new_label
-            self.update_graphics_item()
-        if self.label.id != new_label.id:
+        # Updating
+        elif self.label.id != new_label.id or self.label.color != new_label.color:
+            # Update the label in user_confidence if it exists
+            if self.user_confidence:
+                old_confidence = next(iter(self.user_confidence.values()))
+                self.user_confidence = {new_label: old_confidence}
+            
+            # Update the label in machine_confidence if it exists
+            if self.machine_confidence:
+                new_machine_confidence = {}
+                for label, confidence in self.machine_confidence.items():
+                    if label.id == self.label.id:
+                        new_machine_confidence[new_label] = confidence
+                    else:
+                        new_machine_confidence[label] = confidence
+                self.machine_confidence = new_machine_confidence
+            # Update the label
             self.label = new_label
-            self.update_graphics_item()
+
+        # Always update the graphics item
+        self.update_graphics_item()
 
     def _prepare_data_for_qimage(self, data):
         if data.shape[0] == 3:  # RGB image
diff --git a/coralnet_toolbox/QtLabelWindow.py b/coralnet_toolbox/QtLabelWindow.py
index fefffa69..30066183 100644
--- a/coralnet_toolbox/QtLabelWindow.py
+++ b/coralnet_toolbox/QtLabelWindow.py
@@ -405,7 +405,10 @@ def edit_labels(self, old_label, new_label, delete_old=False):
 
         self.update_labels_per_row()
         self.reorganize_labels()
-
+        
+        # Refresh the scene with the new label
+        self.annotation_window.set_image(self.annotation_window.current_image_path)
+        
     def delete_label(self, label):
         if (label.short_label_code == "Review" and
                 label.long_label_code == "Review" and

From 05477c29b885ad81047e5319e52d6854c7e178e5 Mon Sep 17 00:00:00 2001
From: Jordan Pierce <115024024+Jordan-Pierce@users.noreply.github.com>
Date: Mon, 16 Dec 2024 15:51:06 -0500
Subject: [PATCH 2/3] Fix formatting of info label text in dataset export
 dialog

---
 coralnet_toolbox/MachineLearning/ExportDataset/QtBase.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/coralnet_toolbox/MachineLearning/ExportDataset/QtBase.py b/coralnet_toolbox/MachineLearning/ExportDataset/QtBase.py
index a2b5bf80..fd90817b 100644
--- a/coralnet_toolbox/MachineLearning/ExportDataset/QtBase.py
+++ b/coralnet_toolbox/MachineLearning/ExportDataset/QtBase.py
@@ -85,8 +85,7 @@ def setup_info_layout(self):
         layout = QVBoxLayout()
         
         # Create a QLabel with explanatory text and hyperlink
-        info_label = QLabel("Export Patches, Rectangles, and Polygons to create a YOLO-formatted \
-                             Classification, Detection or Segmentation dataset.")
+        info_label = QLabel("Export Patches, Rectangles, and Polygons to create a YOLO-formatted Classification, Detection or Segmentation dataset.")
         
         info_label.setOpenExternalLinks(True)
         info_label.setWordWrap(True)

From 7997aecee52d81ec23948784199f958d184f9e17 Mon Sep 17 00:00:00 2001
From: Jordan Pierce <115024024+Jordan-Pierce@users.noreply.github.com>
Date: Mon, 16 Dec 2024 15:51:43 -0500
Subject: [PATCH 3/3] =?UTF-8?q?Bump=20version:=200.0.13=20=E2=86=92=200.0.?=
 =?UTF-8?q?14?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 coralnet_toolbox/__init__.py | 2 +-
 pyproject.toml               | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/coralnet_toolbox/__init__.py b/coralnet_toolbox/__init__.py
index e90f09d2..fd54aa7a 100644
--- a/coralnet_toolbox/__init__.py
+++ b/coralnet_toolbox/__init__.py
@@ -2,7 +2,7 @@
 
 from coralnet_toolbox.main import run
 
-__version__ = "0.0.13"
+__version__ = "0.0.14"
 __author__ = "Jordan Pierce"
 __email__ = "jordan.pierce@noaa.gov"
 __credits__ = "National Center for Coastal and Ocean Sciences (NCCOS)"
\ No newline at end of file
diff --git a/pyproject.toml b/pyproject.toml
index 3df0ecdc..b663bb93 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "coralnet-toolbox"
-version = "0.0.13"
+version = "0.0.14"
 dynamic = [
     "dependencies",
 ]
@@ -48,7 +48,7 @@ universal = true
 
 
 [tool.bumpversion]
-current_version = "0.0.13"
+current_version = "0.0.14"
 commit = true
 tag = true