KomaMRI.jl Workshop

[cncastillo]

I think it is a good idea to do a workshop about Koma. This is a tentative schedule:

Introduction

• How to install Julia
• Brief explanation of Julia
• How to install Koma
• Brief explanation of Koma

First simulations (1D)

• Simulate an FID
• Spin echo and gradient echo
• View differences in signal decay (T2 and T2*)
• Simulate an slice-selective RF

Koma for quantitative MRI (2D)

• Reading a brain phantom with T1, T2, and M0 maps (soon in our open-source phantom standard)
• -> View phantom
• Reading a sequence generated with Pulseq (open-source sequence format):
• -> View sequence
• -> View gradients's moments
• -> View k-space
• Simulate MRF acquisition and export raw data to ISMRMRD (open-source raw data format)
• - >View raw data
• Dictionary generation for quantitative MRI (qMRI) with BlochDict simulation method
• Using this dictionary to reconstruct T1 and T2 maps of the simulated MRF acquisition (Koma+MRIReco, with LRI recon)
• -> View reconstruction results and compare with GT

Ideally this would be in a Pluto notebook hosted in Binder so it does not require installation.

[cncastillo]

I think the "Introduction" and "First simulations (1D)" are partialy covered in #242 (Presentations + Pluto)

• Add educational Pluto example #253

I did a brief explanation of Julia in my MRI Together presentation #246.