From 9f11bbb2ea3f70088f7015b1518f6cc86bcf783e Mon Sep 17 00:00:00 2001 From: Michael McKinsey Date: Wed, 22 Jan 2025 14:53:58 -0600 Subject: [PATCH 1/5] Fix spelling --- thicket/tests/utils.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/thicket/tests/utils.py b/thicket/tests/utils.py index 7f7e80e1..5a80528d 100644 --- a/thicket/tests/utils.py +++ b/thicket/tests/utils.py @@ -19,8 +19,8 @@ def check_identity( if equal: assert ( obj1.__dict__[key] is obj2.__dict__[key] - ), "{} should have the same identy".format(key) + ), "{} should have the same identity".format(key) else: assert ( obj1.__dict__[key] is not obj2.__dict__[key] - ), "{} should not have the same identy".format(key) + ), "{} should not have the same identity".format(key) From 0bb1630e98eb0407359bd202d3a9ef9c2ccf9a2d Mon Sep 17 00:00:00 2001 From: Michael McKinsey Date: Wed, 22 Jan 2025 14:55:01 -0600 Subject: [PATCH 2/5] Add class member profile_idx_name and update unit tests --- thicket/ensemble.py | 4 +- thicket/groupby.py | 8 ++-- thicket/stats/calc_boxplot_statistics.py | 4 +- .../data/example-json/user_ensemble.json | 2 +- thicket/tests/test_copy.py | 2 +- thicket/tests/test_filter_profile.py | 2 +- thicket/tests/test_from_statsframes.py | 2 +- thicket/tests/test_groupby.py | 2 +- thicket/tests/test_query.py | 2 +- thicket/tests/test_query_stats.py | 2 +- thicket/tests/test_thicket.py | 21 ++++++++-- thicket/thicket.py | 42 +++++++++++-------- 12 files changed, 58 insertions(+), 35 deletions(-) diff --git a/thicket/ensemble.py b/thicket/ensemble.py index f0f77bd1..c2a2763f 100644 --- a/thicket/ensemble.py +++ b/thicket/ensemble.py @@ -157,7 +157,7 @@ def _handle_metadata(): thickets_cp[i].metadata.reset_index(drop=True, inplace=True) if metadata_key is None: for i in range(len(thickets_cp)): - thickets_cp[i].metadata.index.set_names("profile", inplace=True) + thickets_cp[i].metadata.index.set_names(thickets_cp[i].profile_idx_name, inplace=True) else: for i in range(len(thickets_cp)): if metadata_key != inner_idx: @@ -228,7 +228,7 @@ def _handle_perfdata(): "new_profiles", append=True, inplace=True ) thickets_cp[i].dataframe.index.rename( - "profile", level="new_profiles", inplace=True + thickets_cp[i].profile_idx_name, level="new_profiles", inplace=True ) else: # Change second-level index to be from metadata's "metadata_key" column for i in range(len(thickets_cp)): diff --git a/thicket/groupby.py b/thicket/groupby.py index a90540d7..62564ac7 100644 --- a/thicket/groupby.py +++ b/thicket/groupby.py @@ -97,7 +97,7 @@ def _agg_rows(col_series): tk_c.dataframe.reset_index() .drop(list(tk_c.dataframe.columns) + ["node"], axis=1) .drop_duplicates() - .set_index("profile") + .set_index(tk_c.profile_idx_name) ) if ( len(new_profile_label_mapping_df.columns) > 1 @@ -120,11 +120,11 @@ def _agg_rows(col_series): tk_c.profile_mapping = new_profile_mapping # Aggregate metadata tk_c.metadata = tk_c.metadata.reset_index() - tk_c.metadata["profile"] = tk_c.metadata["profile"].map( + tk_c.metadata[tk_c.profile_idx_name] = tk_c.metadata[tk_c.profile_idx_name].map( new_profile_label_mapping ) - tk_c.metadata = tk_c.metadata.set_index("profile") - tk_c.metadata = tk_c.metadata.groupby("profile").agg(_agg_rows) + tk_c.metadata = tk_c.metadata.set_index(tk_c.profile_idx_name) + tk_c.metadata = tk_c.metadata.groupby(tk_c.profile_idx_name).agg(_agg_rows) def _compute_agg_df(col_names, functions, _tk, _agg_cols, _perf_indices): agg_df = _tk.dataframe[_agg_cols].groupby(_perf_indices).agg(functions[0]) diff --git a/thicket/stats/calc_boxplot_statistics.py b/thicket/stats/calc_boxplot_statistics.py index 982afc95..0c2073b8 100644 --- a/thicket/stats/calc_boxplot_statistics.py +++ b/thicket/stats/calc_boxplot_statistics.py @@ -86,7 +86,7 @@ def calc_boxplot_statistics(thicket, columns=[], quartiles=[0.25, 0.5, 0.75], ** for i in range(0, len(values)): if values[i] > upper_fence or values[i] < lower_fence: profile.append( - thicket.dataframe.loc[node].reset_index()["profile"][i] + thicket.dataframe.loc[node].reset_index()[thicket.profile_idx_name][i] ) else: continue @@ -146,7 +146,7 @@ def calc_boxplot_statistics(thicket, columns=[], quartiles=[0.25, 0.5, 0.75], ** for i in range(0, len(values)): if values[i] > upper_fence or values[i] < lower_fence: profile.append( - thicket.dataframe[idx].loc[node].reset_index()["profile"][i] + thicket.dataframe[idx].loc[node].reset_index()[thicket.profile_idx_name][i] ) else: continue diff --git a/thicket/tests/data/example-json/user_ensemble.json b/thicket/tests/data/example-json/user_ensemble.json index 43efee79..68f1311e 100644 --- a/thicket/tests/data/example-json/user_ensemble.json +++ b/thicket/tests/data/example-json/user_ensemble.json @@ -1 +1 @@ -{"graph": [{"0": {"data": {"type": "function", "name": "MPI_Allreduce"}, "children": [], "parents": []}, "1": {"data": {"type": "function", "name": "MPI_Bcast"}, "children": [], "parents": []}, "2": {"data": {"type": 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"datasets/user/cgpgz9D9wwOI5NQxp_0.cali", "5046608253979716978": "datasets/user/cBCL3Nga1e2NbkMY5_0.cali"}} \ No newline at end of file diff --git a/thicket/tests/test_copy.py b/thicket/tests/test_copy.py index 4bd4e306..12a4a838 100644 --- a/thicket/tests/test_copy.py +++ b/thicket/tests/test_copy.py @@ -60,7 +60,7 @@ def test_copy(rajaperf_seq_O3_1M_cali, intersection, fill_perfdata): # Shallow copy of data node = other.dataframe.index.get_level_values("node")[0] - profile = other.dataframe.index.get_level_values("profile")[0] + profile = other.dataframe.index.get_level_values(other.profile_idx_name)[0] other.dataframe.loc[(node, profile), "nid"] = -1 assert ( other.dataframe.loc[(node, profile), "nid"] diff --git a/thicket/tests/test_filter_profile.py b/thicket/tests/test_filter_profile.py index 216b1d7a..418b4653 100644 --- a/thicket/tests/test_filter_profile.py +++ b/thicket/tests/test_filter_profile.py @@ -20,7 +20,7 @@ def test_filter_profile(rajaperf_cali_1trial): tk_filt.profile, tk_filt.profile_mapping.keys(), tk_filt.metadata.index, - tk_filt.dataframe.index.get_level_values("profile"), + tk_filt.dataframe.index.get_level_values(tk_filt.profile_idx_name), ]: assert all([prof not in component for prof in rm_profs]) assert all([prof in component for prof in keep_profs]) diff --git a/thicket/tests/test_from_statsframes.py b/thicket/tests/test_from_statsframes.py index 23ecacf8..97b05421 100644 --- a/thicket/tests/test_from_statsframes.py +++ b/thicket/tests/test_from_statsframes.py @@ -30,7 +30,7 @@ def test_single_trial(mpi_scaling_cali, intersection, fill_perfdata): tk = th.Thicket.from_statsframes(th_list, disable_tqdm=True) # Check level values - assert set(tk.dataframe.index.get_level_values("profile")) == { + assert set(tk.dataframe.index.get_level_values(tk.profile_idx_name)) == { 0, 1, 2, diff --git a/thicket/tests/test_groupby.py b/thicket/tests/test_groupby.py index c2acb371..20717393 100644 --- a/thicket/tests/test_groupby.py +++ b/thicket/tests/test_groupby.py @@ -24,7 +24,7 @@ def check_groupby(th, columns_values): th_list = list(th.groupby(column).values()) for thicket in th_list: - check_identity(th, thicket, "default_metric") + check_identity(th, thicket, ["default_metric", "profile_idx_name"]) # inspect all unique values in the use case for itr, uni_val in enumerate(unique_values): diff --git a/thicket/tests/test_query.py b/thicket/tests/test_query.py index 287933be..2c3540cf 100644 --- a/thicket/tests/test_query.py +++ b/thicket/tests/test_query.py @@ -48,7 +48,7 @@ def check_query(th, hnids, query): th_df_profiles.unique().to_list() ) - check_identity(th, filt_th, "default_metric") + check_identity(th, filt_th, ["default_metric", "profile_idx_name"]) def test_query(rajaperf_cuda_block128_1M_cali, intersection, fill_perfdata): diff --git a/thicket/tests/test_query_stats.py b/thicket/tests/test_query_stats.py index e98cc2a5..c5f88d33 100644 --- a/thicket/tests/test_query_stats.py +++ b/thicket/tests/test_query_stats.py @@ -58,7 +58,7 @@ def check_query(th_x, hnids, query): assert all([n in pd.unique(filt_th_df_nodes) for n in sframe_nodes]) assert sorted(pd.unique(filt_th_df_nodes)) == sorted(pd.unique(sframe_nodes)) - check_identity(th_x, filt_th, "default_metric") + check_identity(th_x, filt_th, ["default_metric", "profile_idx_name"]) def test_query_stats(rajaperf_cuda_block128_1M_cali, intersection, fill_perfdata): diff --git a/thicket/tests/test_thicket.py b/thicket/tests/test_thicket.py index af7375a2..b8471505 100644 --- a/thicket/tests/test_thicket.py +++ b/thicket/tests/test_thicket.py @@ -111,7 +111,7 @@ def test_metadata_columns_to_perfdata( assert "variant" not in tkc2.metadata # Check error raise for join_key - tkc2.dataframe = tkc2.dataframe.reset_index(level="profile", drop=True) + tkc2.dataframe = tkc2.dataframe.reset_index(level=tkc2.profile_idx_name, drop=True) with pytest.raises(KeyError, match="'profile' must be present"): tkc2.metadata_columns_to_perfdata("tuning", overwrite=True) @@ -198,8 +198,8 @@ def test_thicketize_graphframe(rajaperf_seq_O3_1M_cali): assert ht1.graph == th1.graph # Check dataframes are equivalent when profile level is dropped - th1.dataframe.reset_index(level="profile", inplace=True) - th1.dataframe.drop("profile", axis=1, inplace=True) + th1.dataframe.reset_index(level=th1.profile_idx_name, inplace=True) + th1.dataframe.drop(th1.profile_idx_name, axis=1, inplace=True) assert ht1.dataframe.equals(th1.dataframe) @@ -217,3 +217,18 @@ def test_unique_metadata_base_cuda( assert res["systype_build"] == ["blueos_3_ppc64le_ib_p9"] assert res["variant"] == ["Base_CUDA"] assert res["tuning"] == ["block_128"] + + +def test_different_profile_idx_name( + rajaperf_seq_O3_1M_cali, intersection, fill_perfdata +): + th = Thicket( + graph=ht.graph.Graph(roots=[]), + dataframe=pd.DataFrame( + index=pd.MultiIndex( + names=["node", "profile2"], levels=[[], []], codes=[[], []] + ) + ), + profile_idx_name="profile2", + ) + assert th.profile_idx_name == "profile2" diff --git a/thicket/thicket.py b/thicket/thicket.py index 13133f3d..71d0eb25 100644 --- a/thicket/thicket.py +++ b/thicket/thicket.py @@ -63,6 +63,7 @@ def __init__( metadata={}, performance_cols=None, profile=None, + profile_idx_name="profile", profile_mapping=None, statsframe=None, statsframe_ops_cache=None, @@ -81,6 +82,7 @@ def __init__( performance_cols (list): list of numeric columns within the performance dataframe profile (list): list of hashed profile strings + profile_idx_name (str): name of the profile index in the dataframe profile_mapping (dict): mapping of hashed profile strings to original strings statsframe (DataFrame): pandas DataFrame indexed by Nodes from the graph """ @@ -88,6 +90,7 @@ def __init__( graph, dataframe, exc_metrics, inc_metrics, default_metric, metadata ) self.profile = profile + self.profile_idx_name = profile_idx_name self.profile_mapping = profile_mapping if statsframe is None: self.statsframe = GraphFrame( @@ -202,12 +205,12 @@ def thicketize_graphframe(gf, prf): temp_meta = {} temp_meta[hash_arg] = th.metadata th.metadata = pd.DataFrame.from_dict(temp_meta, orient="index") - th.metadata.index.set_names("profile", inplace=True) + th.metadata.index.set_names(th.profile_idx_name, inplace=True) # Add profile to dataframe index - th.dataframe["profile"] = hash_arg + th.dataframe[th.profile_idx_name] = hash_arg index_names = list(th.dataframe.index.names) - index_names.insert(1, "profile") + index_names.insert(1, th.profile_idx_name) th.dataframe.reset_index(inplace=True) th.dataframe.set_index(index_names, inplace=True) @@ -590,15 +593,16 @@ def from_json(json_thicket): dataframe=gf.dataframe, exc_metrics=thicket_dict["exclusive_metrics"], inc_metrics=thicket_dict["inclusive_metrics"], - profile=thicket_dict["profile"], + profile=thicket_dict[thicket_dict["profile_idx_name"]], + profile_idx_name=thicket_dict["profile_idx_name"], profile_mapping=thicket_dict["profile_mapping"], ) if "metadata" in thicket_dict: mf = pd.DataFrame(thicket_dict["metadata"]) - mf.set_index(mf["profile"], inplace=True) - if "profile" in mf.columns: - mf = mf.drop(columns=["profile"]) + mf.set_index(mf[th.profile_idx_name], inplace=True) + if th.profile_idx_name in mf.columns: + mf = mf.drop(columns=[th.profile_idx_name]) th.metadata = mf # catch condition where there are no stats @@ -687,10 +691,10 @@ def _rep_agg_func(col): agg_data = pd.DataFrame.from_records(rep_data).agg(_rep_agg_func) # Add node and profile agg_data["node"] = node_profile[0] - agg_data["profile"] = node_profile[1] + agg_data[self.profile_idx_name] = node_profile[1] # Append to main df ncu_df = pd.concat([ncu_df, pd.DataFrame([agg_data])], ignore_index=True) - ncu_df = ncu_df.set_index(["node", "profile"]) + ncu_df = ncu_df.set_index(["node", self.profile_idx_name]) # Apply chosen metrics if chosen_metrics: @@ -715,7 +719,7 @@ def _rep_agg_func(col): ) def metadata_columns_to_perfdata( - self, metadata_columns, overwrite=False, drop=False, join_key="profile" + self, metadata_columns, overwrite=False, drop=False, join_key=None ): """Add columns from the metadata table to the performance data table. Joins on join_key, an index or column that is present in both tables. @@ -723,8 +727,11 @@ def metadata_columns_to_perfdata( metadata_columns (list or str): List of the columns from the metadata table overwrite (bool): Determines overriding behavior in performance data table drop (bool): Whether to drop the columns from the metadata table afterwards - join_key (str): Name of the index/column to join on if not 'profile' + join_key (str): Name of the index/column to join on if not self.profile_idx_name """ + if join_key is None: + join_key = self.profile_idx_name + # Raise error if join_key is not present in both tables if not ( join_key in self.dataframe.reset_index() @@ -1145,7 +1152,7 @@ def from_statsframes(tk_list, metadata_key=None, disable_tqdm=False): # Pre-check of data structures for tk in tk_list: verify_thicket_structures( - tk.dataframe, index=["node", "profile"] + tk.dataframe, index=["node", tk.profile_idx_name] ) # Required for deepcopy operation verify_thicket_structures( tk.statsframe.dataframe, index=["node"] @@ -1256,7 +1263,8 @@ def to_json(self, ensemble=True, metadata=True, stats=True): jsonified_thicket["inclusive_metrics"] = self.inc_metrics jsonified_thicket["exclusive_metrics"] = self.exc_metrics - jsonified_thicket["profile"] = self.profile + jsonified_thicket[self.profile_idx_name] = self.profile + jsonified_thicket["profile_idx_name"] = self.profile_idx_name jsonified_thicket["profile_mapping"] = self.profile_mapping return json.dumps(jsonified_thicket) @@ -1572,7 +1580,7 @@ def groupby(self, by): # table profile_id = df.index.values.tolist() sub_thicket.dataframe = sub_thicket.dataframe[ - sub_thicket.dataframe.index.get_level_values("profile").isin(profile_id) + sub_thicket.dataframe.index.get_level_values(self.profile_idx_name).isin(profile_id) ] # clear the aggregated statistics table for current unique group @@ -1629,7 +1637,7 @@ def filter_stats(self, filter_function): def move_metrics_to_statsframe(self, metric_columns, profile=None, override=False): if not isinstance(metric_columns, (list, tuple)): raise TypeError("'metric_columns' must be a list or tuple") - profile_list = self.dataframe.index.unique(level="profile").tolist() + profile_list = self.dataframe.index.unique(level=self.profile_idx_name).tolist() if profile is None and len(profile_list) != 1: raise ValueError( "Cannot move a metric to statsframe when there are multiple profiles. Set the 'profile' argument to the profile you want to move" @@ -1638,10 +1646,10 @@ def move_metrics_to_statsframe(self, metric_columns, profile=None, override=Fals raise ValueError("Invalid profile: {}".format(profile)) df_for_profile = None if profile is None: - df_for_profile = self.dataframe.reset_index(level="profile", drop=True) + df_for_profile = self.dataframe.reset_index(level=self.profile_idx_name, drop=True) else: df_for_profile = self.dataframe.xs( - profile, level="profile", drop_level=True + profile, level=self.profile_idx_name, drop_level=True ) new_statsframe_df = self.statsframe.dataframe.copy(deep=True) for c in metric_columns: From 4b938f5211ed9e429727dff5f849b16aa4e89140 Mon Sep 17 00:00:00 2001 From: Michael McKinsey Date: Wed, 22 Jan 2025 18:11:43 -0600 Subject: [PATCH 3/5] Rm unecessary args --- thicket/tests/test_thicket.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/thicket/tests/test_thicket.py b/thicket/tests/test_thicket.py index b8471505..556ab0a3 100644 --- a/thicket/tests/test_thicket.py +++ b/thicket/tests/test_thicket.py @@ -219,9 +219,7 @@ def test_unique_metadata_base_cuda( assert res["tuning"] == ["block_128"] -def test_different_profile_idx_name( - rajaperf_seq_O3_1M_cali, intersection, fill_perfdata -): +def test_different_profile_idx_name(): th = Thicket( graph=ht.graph.Graph(roots=[]), dataframe=pd.DataFrame( From f84e73489b9d74477771feea95d14838ef669c64 Mon Sep 17 00:00:00 2001 From: Michael McKinsey Date: Wed, 22 Jan 2025 18:20:12 -0600 Subject: [PATCH 4/5] Black --- thicket/ensemble.py | 14 +++++++++----- thicket/stats/calc_boxplot_statistics.py | 8 ++++++-- thicket/thicket.py | 8 ++++++-- 3 files changed, 21 insertions(+), 9 deletions(-) diff --git a/thicket/ensemble.py b/thicket/ensemble.py index c2a2763f..626b9674 100644 --- a/thicket/ensemble.py +++ b/thicket/ensemble.py @@ -157,7 +157,9 @@ def _handle_metadata(): thickets_cp[i].metadata.reset_index(drop=True, inplace=True) if metadata_key is None: for i in range(len(thickets_cp)): - thickets_cp[i].metadata.index.set_names(thickets_cp[i].profile_idx_name, inplace=True) + thickets_cp[i].metadata.index.set_names( + thickets_cp[i].profile_idx_name, inplace=True + ) else: for i in range(len(thickets_cp)): if metadata_key != inner_idx: @@ -186,9 +188,9 @@ def _handle_misc(): combined_th.profile = [new_mappings[prf] for prf in combined_th.profile] profile_mapping_cp = combined_th.profile_mapping.copy() for k, v in profile_mapping_cp.items(): - combined_th.profile_mapping[ - new_mappings[k] - ] = combined_th.profile_mapping.pop(k) + combined_th.profile_mapping[new_mappings[k]] = ( + combined_th.profile_mapping.pop(k) + ) combined_th.performance_cols = helpers._get_perf_columns( combined_th.dataframe ) @@ -228,7 +230,9 @@ def _handle_perfdata(): "new_profiles", append=True, inplace=True ) thickets_cp[i].dataframe.index.rename( - thickets_cp[i].profile_idx_name, level="new_profiles", inplace=True + thickets_cp[i].profile_idx_name, + level="new_profiles", + inplace=True, ) else: # Change second-level index to be from metadata's "metadata_key" column for i in range(len(thickets_cp)): diff --git a/thicket/stats/calc_boxplot_statistics.py b/thicket/stats/calc_boxplot_statistics.py index 0c2073b8..fb5d9e5a 100644 --- a/thicket/stats/calc_boxplot_statistics.py +++ b/thicket/stats/calc_boxplot_statistics.py @@ -86,7 +86,9 @@ def calc_boxplot_statistics(thicket, columns=[], quartiles=[0.25, 0.5, 0.75], ** for i in range(0, len(values)): if values[i] > upper_fence or values[i] < lower_fence: profile.append( - thicket.dataframe.loc[node].reset_index()[thicket.profile_idx_name][i] + thicket.dataframe.loc[node].reset_index()[ + thicket.profile_idx_name + ][i] ) else: continue @@ -146,7 +148,9 @@ def calc_boxplot_statistics(thicket, columns=[], quartiles=[0.25, 0.5, 0.75], ** for i in range(0, len(values)): if values[i] > upper_fence or values[i] < lower_fence: profile.append( - thicket.dataframe[idx].loc[node].reset_index()[thicket.profile_idx_name][i] + thicket.dataframe[idx] + .loc[node] + .reset_index()[thicket.profile_idx_name][i] ) else: continue diff --git a/thicket/thicket.py b/thicket/thicket.py index 71d0eb25..e5075f15 100644 --- a/thicket/thicket.py +++ b/thicket/thicket.py @@ -1580,7 +1580,9 @@ def groupby(self, by): # table profile_id = df.index.values.tolist() sub_thicket.dataframe = sub_thicket.dataframe[ - sub_thicket.dataframe.index.get_level_values(self.profile_idx_name).isin(profile_id) + sub_thicket.dataframe.index.get_level_values( + self.profile_idx_name + ).isin(profile_id) ] # clear the aggregated statistics table for current unique group @@ -1646,7 +1648,9 @@ def move_metrics_to_statsframe(self, metric_columns, profile=None, override=Fals raise ValueError("Invalid profile: {}".format(profile)) df_for_profile = None if profile is None: - df_for_profile = self.dataframe.reset_index(level=self.profile_idx_name, drop=True) + df_for_profile = self.dataframe.reset_index( + level=self.profile_idx_name, drop=True + ) else: df_for_profile = self.dataframe.xs( profile, level=self.profile_idx_name, drop_level=True From 8a4416d440fd3f8917418b69808fbcad5fb176cb Mon Sep 17 00:00:00 2001 From: Michael McKinsey Date: Wed, 22 Jan 2025 18:57:42 -0600 Subject: [PATCH 5/5] black --- thicket/ensemble.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/thicket/ensemble.py b/thicket/ensemble.py index 626b9674..08dee352 100644 --- a/thicket/ensemble.py +++ b/thicket/ensemble.py @@ -188,9 +188,9 @@ def _handle_misc(): combined_th.profile = [new_mappings[prf] for prf in combined_th.profile] profile_mapping_cp = combined_th.profile_mapping.copy() for k, v in profile_mapping_cp.items(): - combined_th.profile_mapping[new_mappings[k]] = ( - combined_th.profile_mapping.pop(k) - ) + combined_th.profile_mapping[ + new_mappings[k] + ] = combined_th.profile_mapping.pop(k) combined_th.performance_cols = helpers._get_perf_columns( combined_th.dataframe )