From c506a7a6e45153e7f2282307db68aff0cd34f197 Mon Sep 17 00:00:00 2001 From: Louise Huuki Date: Tue, 18 Feb 2025 17:29:08 +0000 Subject: [PATCH] Bump 0.99.28 - Fix CRANpkg citations --- DESCRIPTION | 2 +- vignettes/DeconvoBuddies.Rmd | 26 +++++++++++++------------- 2 files changed, 14 insertions(+), 14 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 68d0d67..3e1ce9a 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: DeconvoBuddies Title: Helper Functions for LIBD Deconvolution -Version: 0.99.27 +Version: 0.99.28 Date: 2025-02-18 Authors@R: c( diff --git a/vignettes/DeconvoBuddies.Rmd b/vignettes/DeconvoBuddies.Rmd index 9a5b544..24defd5 100644 --- a/vignettes/DeconvoBuddies.Rmd +++ b/vignettes/DeconvoBuddies.Rmd @@ -389,25 +389,25 @@ made possible thanks to: * R `r Citep(bib[["R"]])` * `r Biocpkg("AnnotationHub")` `r Citep(bib[["AnnotationHub"]])` * `r Biocpkg("BiocFileCache")` `r Citep(bib[["BiocFileCache"]])` -* `r Biocpkg("dplyr")` `r Citep(bib[["dplyr"]])` +* `r CRANpkg("dplyr")` `r Citep(bib[["dplyr"]])` * `r Biocpkg("ExperimentHub")` `r Citep(bib[["ExperimentHub"]])` -* `r Biocpkg("ggplot2")` `r Citep(bib[["ggplot2"]])` -* `r Biocpkg("graphics")` `r Citep(bib[["graphics"]])` -* `r Biocpkg("grDevices")` `r Citep(bib[["grDevices"]])` -* `r Biocpkg("matrixStats")` `r Citep(bib[["matrixStats"]])` -* `r Biocpkg("methods")` `r Citep(bib[["methods"]])` -* `r Biocpkg("purrr")` `r Citep(bib[["purrr"]])` -* `r Biocpkg("rafalib")` `r Citep(bib[["rafalib"]])` -* `r Biocpkg("reshape2")` `r Citep(bib[["reshape2"]])` +* `r CRANpkg("ggplot2")` `r Citep(bib[["ggplot2"]])` +* `r CRANpkg("graphics")` `r Citep(bib[["graphics"]])` +* `r CRANpkg("grDevices")` `r Citep(bib[["grDevices"]])` +* `r CRANpkg("matrixStats")` `r Citep(bib[["matrixStats"]])` +* `r CRANpkg("methods")` `r Citep(bib[["methods"]])` +* `r CRANpkg("purrr")` `r Citep(bib[["purrr"]])` +* `r CRANpkg("rafalib")` `r Citep(bib[["rafalib"]])` +* `r CRANpkg("reshape2")` `r Citep(bib[["reshape2"]])` * `r Biocpkg("S4Vectors")` `r Citep(bib[["S4Vectors"]])` * `r Biocpkg("scran")` `r Citep(bib[["scran"]])` * `r Biocpkg("SingleCellExperiment")` `r Citep(bib[["SingleCellExperiment"]])` * `r Biocpkg("spatialLIBD")` `r Citep(bib[["spatialLIBD"]])` -* `r Biocpkg("stats")` `r Citep(bib[["stats"]])` -* `r Biocpkg("stringr")` `r Citep(bib[["stringr"]])` +* `r CRANpkg("stats")` `r Citep(bib[["stats"]])` +* `r CRANpkg("stringr")` `r Citep(bib[["stringr"]])` * `r Biocpkg("SummarizedExperiment")` `r Citep(bib[["SummarizedExperiment"]])` -* `r Biocpkg("tibble")` `r Citep(bib[["tibble"]])` -* `r Biocpkg("utils")` `r Citep(bib[["utils"]])` +* `r CRANpkg("tibble")` `r Citep(bib[["tibble"]])` +* `r CRANpkg("utils")` `r Citep(bib[["utils"]])` This vignette was generated using `r Biocpkg("BiocStyle")` `r Citep(bib[["BiocStyle"]])` with `r CRANpkg("knitr")`