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.gitignore
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.Rproj.user
.Rhistory
.RData
.Ruserdata
.RDataTmp
.RDataTmp1
.RDataTmp2
.RDataTmp3
.RDataTmp4
.Rbuildignore
0.7Heatmap.pdf
0.7VolcanoPlot.pdf
0.8Heatmap.pdf
0.8VolcanoPlot-1.pdf
0.8VolcanoPlot.pdf
0.8_Heatmapraw_s_proteincast.csv
0.8_heatmapInter_L.html
0.8_heatmapInter_L_nocolv.html
5479_cluster_imaging.png
Ali.Rmd
Ali_deconv.Rmd
Ali_deconv.html
Ali_deconv2.Rmd
Ali_deconv2.html
Ali_deconv3.Rmd
Ali_deconv3.html
Both_high_ven.png
Feature no.1 255.233 neg.png
Feature no.2 262.1813 neg.png
Feature no.3 283.2643 neg.png
Intensity_high_ven.png
LCMS correlation result.Rmd
LCMS-correlation-result.docx
LCMS-correlation-result.html
LCMS-correlation-result.md
LCMS-correlation-result.pdf
LCMS-correlation-result_files
Ofb-hi-res-annotated-lipids-ion-image.Rmd
Ofb-hi-res-annotated-lipids-ion-image15-18.Rmd
Ofb-hi-res-annotated-lipids-ion-image_cache
Ofb-hi-res-annotated-lipids-ion-images.Rmd
Ofb-hi-res-annotated-lipids-ion-images_cache
Ofb-hi-res-annotated-lipids-ion-imagess.Rmd
Ofb-hi-res-annotated-lipids-ion-imagess_cache
PC1_top.csv
PCA_image.png
PCA_plot.png
PROTEIN_FDR.CSV
PROTEIN_Score_histogram.png
PROTEIN_Score_histogram_full_scale.png
Protein_FDR.png
Protein_Summary_bind_freq_merge.rds
Protein_Summary_bind_freq_merge_freq.rds
QCPlot.pdf
README_cache
README_pep_cutoff_rank1.Rmd
README_pep_cutoff_rank1_files
READMEgit.Rmd
ROC_table_trim_005.csv
ROC_table_trim_05.csv
Rplot.png
Rplot001.jpg
Rplot01.png
Rplot02.png
Rplot03.png
Rplot04.png
Rplot05.png
Rplot06.png
Rplot07.png
Rplot08.png
Rplot09.png
Rplots.pdf
Score_high_ven.png
Segmentation_enzyme_FDR_LCMS correlation.Rmd
Segmentation_enzyme_FDR_LCMS-correlation.Rmd
Segmentation_enzyme_FDR_LCMS-correlation.html
Segmentation_enzyme_FDR_LCMS-correlation.md
Segmentation_enzyme_FDR_LCMS-correlation_files
Spectrum_neg.csv
a.png
all_ven.png
colorwheel.pdf
colorwheel.png
coordata.csv
dotp_thresHeatmap.pdf
dotp_thresVolcanoPlot-1.pdf
dotp_thresVolcanoPlot.pdf
farhana.Rmd
mse_mean_spec_list_merge_neg.csv
msstats-1.log
msstats-10.log
msstats-11.log
msstats-12.log
msstats-13.log
msstats-2.log
msstats-3.log
msstats-4.log
msstats-5.log
msstats-6.log
msstats-7.log
msstats-8.log
msstats-9.log
msstats.log
mtcars.png
out.png
output_df_all_gene_pin_IntAct.RDS
pathfindR_Results(1)
pca.RData
region_protein_df.csv
region_protein_df_TF.csv
segmentation test mousebrain.Rmd
segmentation test mousebrainv2.Rmd
segmentation test ver2.Rmd
segmentation test.nb.html
segmentation-test-ver2.html
segmentation-test-ver2.md
segmentation-test-ver2_files
segmentation-test.Rmd
segmentation-test.log
segmentation-test.tex
segmentation-test_cache
segmentation-test_files
segmentation_test_mouse_brain_v2.Rmd
segmentation_test_mouse_brain_v3.Rmd
segmentation_test_mouse_brain_v4.Rmd
sessionInfo.txt
HiTMaP-web
spatialKMeans_RESULT centers 5 segs.csv
spatialKMeans_RESULT cluster 5 segs.csv
spatialKMeans_RESULT withinss 5 segs.csv
spatialKMeans_image.png
spatialKMeans_image_plot_5_segs.png
venn.svg
README_1.0.Rmd
.DS_Store